hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mph/mph01928/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0156 ( 968 res) mph01928 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RRM RNA recognition motif 127.9 1.1e-33 2 HAT HAT (Half-A-TPR) repeats 127.0 2e-33 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- HAT 1/7 130 162 .. 1 34 [] 11.9 30 HAT 2/7 168 199 .. 1 34 [] 18.6 0.86 HAT 3/7 205 241 .. 1 34 [] 27.0 0.0026 HAT 4/7 328 360 .. 1 34 [] 30.1 0.0003 HAT 5/7 363 395 .. 1 34 [] 18.0 1.4 HAT 6/7 398 434 .. 1 34 [] 14.5 13 HAT 7/7 491 524 .. 1 34 [] 18.1 1.3 RRM 1/2 708 781 .. 1 121 [] 63.2 3.2e-14 RRM 2/2 812 880 .. 1 121 [] 64.7 1.2e-14 Alignments of top-scoring domains: HAT: domain 1 of 7, from 130 to 162: score 11.9, E = 30 *->gdieraRkiyeralekfpdksvdlWlkYaefEer<-* g+ r+R+ +++ e fp + ++lWl+++ E++ mKIAA0156 130 GELSRVRAARQKMSELFP-LTEELWLEWLHDEIS 162 HAT: domain 2 of 7, from 168 to 199: score 18.6, E = 0.86 *->gdieraRkiyeralekfpdksvdlWlkYaefEer<-* d+e++ +++era++ + ++++Wl+Y ++ mKIAA0156 168 LDREHVYELFERAVKDY--ICPNIWLEYGQYSVG 199 HAT: domain 3 of 7, from 205 to 241: score 27.0, E = 0.0026 *->gdieraRkiyeralekfp...dksvdlWlkYaefEer<-* g e++R+++eral +++ + +k +W +Y efE++ mKIAA0156 205 GGLEKVRSVFERALSSVGlhmTKGLAIWEAYREFESA 241 HAT: domain 4 of 7, from 328 to 360: score 30.1, E = 0.0003 *->gdieraRkiyeralekfpdksvdlWlkYaefEer<-* gd+ r+ i+eral + +++dlW++Y +++ r mKIAA0156 328 GDPARIQLIFERALVENC-LVPDLWIRYSQYLDR 360 HAT: domain 5 of 7, from 363 to 395: score 18.0, E = 1.4 *->gdieraRkiyeralekfpdksvdlWlkYaefEer<-* + + + ++ ra++++p v lW +Y+ +er mKIAA0156 363 KVKDLVLSVHSRAVRNCP-WTVALWSRYLLAMER 395 HAT: domain 6 of 7, from 398 to 434: score 14.5, E = 13 *->gdieraRkiyeralekfp...dksvdlWlkYaefEer<-* d++ + +++e al + + + +v++W+ Y+++++r mKIAA0156 398 LDHQTISATFENALSAGFiqaTDYVEIWQVYLDYLRR 434 HAT: domain 7 of 7, from 491 to 524: score 18.1, E = 1.3 *->gdieraRkiyeralekfpdksvdlWlkYaefEer<-* +++++aR++++ + + k+ ++Wl+Y +E++ mKIAA0156 491 NNMQKARELWDSIMTRGNAKYANMWLEYYNLERA 524 RRM: domain 1 of 2, from 708 to 781: score 63.2, E = 3.2e-14 *->tlfVgNLndppdvte..edLrelFkevksvevfraeteskfGkvvsv t+fV+NL p+++ e++ Lr lF + +G+vv + mKIAA0156 708 TVFVSNL--PYSIEEpeVKLRPLF--------------EVCGEVVQI 738 rivrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAl r + G +G+++VeF +e +A++A mKIAA0156 739 RPIFSNR----------------------GDFRGYCYVEFGEEKSAQQA- 765 liealnaskGkeledgGrptlglrVe<-* +e+ k + +Grp + V+ mKIAA0156 766 -LELDR----KIV--EGRP---MFVS 781 RRM: domain 2 of 2, from 812 to 880: score 64.7, E = 1.2e-14 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri +L p+++t+e+L++++ + +G+v++ r+ mKIAA0156 812 ----QGL--PFSCTKEELEDIC--------------KAHGTVKDLRL 838 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli v+++ Gk+kG a+Ve+e+e++A +A + mKIAA0156 839 VTNRA----------------------GKPKGLAYVEYENESQASQA--V 864 ealnaskGkeledgGrptlglrVe<-* +++ G+++ + ++V mKIAA0156 865 MKMD---GMTI--RENV---IKVA 880 //