hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01928/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0156  ( 968 res)   mph01928

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
RRM_1        RNA recognition motif. (a.k.a. RRM, RBD,   119.2    7.7e-32   2
Lsm_interact Lsm interaction motif                       37.6    2.9e-07   1
MPPN         MPPN (rrm-like) domain                     -25.5       0.28   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
RRM_1          1/2     709   780 ..     1    74 []    58.9  1.1e-13
MPPN           1/1     697   792 ..     1   143 []   -25.5     0.28
RRM_1          2/2     812   879 ..     1    74 []    60.2  4.4e-14
Lsm_interact   1/1     947   968 .]     1    22 []    37.6  2.9e-07

Alignments of top-scoring domains:
RRM_1: domain 1 of 2, from 709 to 780: score 58.9, E = 1.1e-13
                   *->lfVgNLppdtteed..LkdlFskfGpiesikivrDttretgrskGfa
                      +fV+NLp+++ e + +L+ lF+ +G+++ i+ +    ++ g  +G++
   mKIAA0156   709    VFVSNLPYSIEEPEvkLRPLFEVCGEVVQIRPIF---SNRGDFRGYC 752  

                   FVeFedeedAekAldalnGkelggrelrv<-*
                   +VeF  e +A+ Al+ l+ k+++gr++ v   
   mKIAA0156   753 YVEFGEEKSAQQALE-LDRKIVEGRPMFV    780  

MPPN: domain 1 of 1, from 697 to 792: score -25.5, E = 0.28
                   *->gekedsdtwsdlsAVtVF....GFPpsitnlvLl.hFsrfGeIvshv
                      +++ ds++      VtVF ++  ++ +     L+++F+++Ge+v   
   mKIAA0156   697    KVAHDSSKD----SVTVFvsnlPYSIEEPEVKLRpLFEVCGEVVQIR 739  

                   rvlksskglnpktfRiFHnHDtGCDEnDstvnksitLksksneltakKYp
                                                                    p
   mKIAA0156   740 -------------------------------------------------P 740  

                   iptn....gNWmhltYssrssAaKALskNGtiingsvivGVkyspatdKq
                   i++n+++  ++ ++   ++ sA++AL  + +i  g  +  V+++   dK+
   mKIAA0156   741 IFSNrgdfRGYCYVEFGEEKSAQQALELDRKIVEGRPMF-VSPC--VDKS 787  

                   vinkk<-*
                     +     
   mKIAA0156   788 KNPDF    792  

RRM_1: domain 2 of 2, from 812 to 879: score 60.2, E = 4.4e-14
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                          +Lp+++t+e+L+d+ + +G +++ ++v++     g++kG a+V
   mKIAA0156   812    ---QGLPFSCTKEELEDICKAHGTVKDLRLVTN---RAGKPKGLAYV 852  

                   eFedeedAekAldalnGkelggrelrv<-*
                   e+e+e++A  A+ +++G++++ ++++v   
   mKIAA0156   853 EYENESQASQAVMKMDGMTIRENVIKV    879  

Lsm_interact: domain 1 of 1, from 947 to 968: score 37.6, E = 2.9e-07
                   *->skesdtappkSNDDFRKlFLkk<-*
                      ++++++ap++SN+DF+Kl+L+k   
   mKIAA0156   947    PSVATEAPKMSNADFAKLLLRK    968  

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