hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj21098/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0154  ( 724 res)   mfj21098

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
VHS      Domain present in VPS-27, Hrs and STAM         197.1    1.6e-54   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
VHS        1/1      15   148 ..     1   145 []   197.1  1.6e-54

Alignments of top-scoring domains:
VHS: domain 1 of 1, from 15 to 148: score 197.1, E = 1.6e-54
                   *->verliekATsesllaeeDWelileICDlinstqedgPkdAvralkKR
                      +e++++kAT++s+++ eDWe+i+ +CD+in++  +gP+ Avr+l+++
   mKIAA0154    15    LESWLNKATNPSNRQ-EDWEYIIGFCDQINKE-LEGPQIAVRLLAHK 59   

                   lnsnknphVallALtLLdtcVkNCGskFhlevaskeFlnreLvkliksky
                   ++s +++++a++ALt+L++c+kNCG ++h ev +++Fln eL+k++ +ky
   mKIAA0154    60 IQS-PQEWEAVQALTVLEACMKNCGRRLHNEVGKFRFLN-ELIKVVSPKY 107  

                   hlkldkDaVkekileliqeWadafCrtgkndpdlslvvdvydlLkkkg<-
                    ++  + +Vk+k++el+++W+ a        p+  +++d+y +Lk++g  
   mKIAA0154   108 LGDRVSEKVKTKVIELLFSWTLAL-------PEEAKIKDAYHMLKRQG   148  

                   *
                    
   mKIAA0154     -   -    

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