hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msj/msj09360/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0153  ( 404 res)   msj09360

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TTL      Tubulin-tyrosine ligase family                 384.3   1.2e-111   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TTL        1/1     106   403 ..     1   330 []   384.3 1.2e-111

Alignments of top-scoring domains:
TTL: domain 1 of 1, from 106 to 403: score 384.3, E = 1.2e-111
                   *->irlderyrllhqaiNhFPgsyeitrKDllwknikrqqkdfgrkgdef
                      ++++e++     ++N+FP+++ +t+KD+l+ +++r+ + +g++    
   mKIAA0153   106    KLSQESP---QVLLNQFPCENLLTVKDCLASIARRAGGPEGPP---- 145  

                   dflprtfilptdlrefvdyfekreregqdntWIvKPsasaRGrGIritnk
                    +lprtf+l+t+l++fv+yf+ rer+g+dn+WI+KP+++aR  ++++tn+
   mKIAA0153   146 -WLPRTFNLRTELPQFVSYFQHRERRGEDNHWICKPWNLARSLDTHVTNN 194  

                   lsqipkwvddfkdNpfvsqiqrrplvVQkYIerPLLidgeDvgkrKFDlR
                   l+ i++            ++++ p+vV+kYIe P+L+ +eDvg++KFD+R
   mKIAA0153   195 LHSIIR------------HRESTPKVVSKYIESPVLFLREDVGNVKFDIR 232  

                   lYVLvtsvdPLriYvYregllRFAsvkYsplsdlddvemHLTNysiqkks
                   ++VL++sv+PLr + Y+ ++lRF+++++  l+dldd+e+H+T+++++++ 
   mKIAA0153   233 YIVLLRSVRPLRLFAYDVFWLRFSNRPFA-LDDLDDYEKHFTVMNYDPD- 280  

                   snYsrlnedynepvghkwslqnlwlyleemgidkeeiwlqiesiiiktil
                            ++++v+   ++ +++++++e  + +++++++i++++++ ++
   mKIAA0153   281 --------VVLKQVHYNEFIPQFEKQYPE--FPWSDVQAEIFKAFTELFQ 320  

                   aaeiveasrlnvaplyncFELyGfDimlkw.d..D.DenlkPwLLEVNas
                   +a+ +++++++++++++++++y++D+ml w++++D+ ++++P++LEVN++
   mKIAA0153   321 VAC-AKPPPMGLCDYPSSRAMYAIDLMLNWdNhpDgKRVMQPQILEVNFN 369  

                   PslhsttkldaelkaplirdvLnlalsvvppdkekdi<-*
                   P++++++++++++++++++++++   +++    +++i   
   mKIAA0153   370 PDCERACRYHPSFFNDVFSTLFL---DETDNCHVTRI    403  

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