hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msp/msp04035/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0149  ( 827 res)   msp04035

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
EGF      Epidermal growth factor-like domain.            26.6     0.0035   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EGF        1/8      61    97 ..     1    32 []    10.7       29
EGF        2/8     108   140 ..     1    32 []    13.0       18
EGF        3/8     142   170 ..     1    32 []     1.6  1.8e+02
EGF        4/8     172   200 ..     1    32 []     7.0       62
EGF        5/8     227   258 ..     1    32 []    25.8   0.0059
EGF        6/8     269   303 ..     1    32 []     6.6       66
EGF        7/8     314   348 ..     1    32 []     9.6       36
EGF        8/8     359   391 ..     1    32 []    10.5       30

Alignments of top-scoring domains:
EGF: domain 1 of 8, from 61 to 97: score 10.7, E = 29
                   *->eCa........pCsnGgtEqnGtCi.sytC.CpgpGytg.rCe<-*
                      eC  +  ++++ C         +C++   C+C+ pG+ g +C    
   mKIAA0149    61    ECTipicegpdACRKEE-----VCVkPGLCrCK-PGFFGaQCS    97   

EGF: domain 2 of 8, from 108 to 140: score 13.0, E = 18
                   *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-*
                      +C ++ pC++      G+C + +  C+C+ p y g+ Ce   
   mKIAA0149   108    DCRetcPCHPR-----GQCEpaTGDCqCQ-PNYWGrLCE    140  

EGF: domain 3 of 8, from 142 to 170: score 1.6, E = 1.8e+02
                   *->eCapCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-*
                      +C  C+++     G+C +++  C+C  pG+  ++C    
   mKIAA0149   142    PCT-CGPH-----GQCDpkTGLChCD-PGWWSpTCR    170  

EGF: domain 4 of 8, from 172 to 200: score 7.0, E = 62
                   *->eCa.....pCsnGgtEqnGtCisytC.CpgpGytg.rCe<-*
                      +C+ ++ + C++          + tC Cp pG+ g+rC    
   mKIAA0149   172    PCQcnpasRCDQA---------TGTCvCP-PGWWGrRCS    200  

EGF: domain 5 of 8, from 227 to 258: score 25.8, E = 0.0059
                   *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-*
                      eC+++  C  G      +C  +s +C+Cp pG++g rCe   
   mKIAA0149   227    ECSrkcQCVRG------QCSvtSGHCsCP-PGFHGiRCE    258  

EGF: domain 6 of 8, from 269 to 303: score 6.6, E = 66
                   *->eCa....pCsnGgtEqnGtCi..sytC..CpgpGytg.rCe<-*
                       C ++ + C+ +     +tC + +  C++C+ pG+ g++C+   
   mKIAA0149   269    QCKescgHCELN-----ATCSpvTGNCesCK-PGWNGtQCK    303  

EGF: domain 7 of 8, from 314 to 348: score 9.6, E = 36
                   *->eCa.pCsnGgtEqnGtCi........sytC..CpgpGytg.rCe<-*
                       C + C         +C+ +++   ++ +C++C  pG+ g+rCe   
   mKIAA0149   314    RCTgQCP--------RCRlgepcqaeTGHCqhCD-PGWLGhRCE    348  

EGF: domain 8 of 8, from 359 to 391: score 10.5, E = 30
                   *->eCa....pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-*
                       C+++ + C +G      tC   + +C C  +Gy g++C    
   mKIAA0149   359    GCSstcpACAQG------TCDavTGECvCS-AGYWGtSCN    391  

//