hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msp/msp04035/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0149  ( 827 res)   msp04035

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
EGF_2    EGF-like domain                                 48.4    1.6e-10   9

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EGF_2      1/9      67    96 ..     1    37 []    26.5  0.00063
EGF_2      2/9     113   139 ..     1    37 []    12.4     0.89
EGF_2      3/9     143   169 ..     1    37 []    17.7     0.23
EGF_2      4/9     173   199 ..     1    37 []    10.0      1.6
EGF_2      5/9     203   228 ..     1    37 []     2.3       12
EGF_2      6/9     232   257 ..     1    37 []    17.4     0.25
EGF_2      7/9     274   302 ..     1    37 []     3.5      8.7
EGF_2      8/9     319   347 ..     1    37 []     4.7      6.3
EGF_2      9/9     364   390 ..     1    37 []    17.3     0.25

Alignments of top-scoring domains:
EGF_2: domain 1 of 9, from 67 to 96: score 26.5, E = 0.00063
                   *->C.....CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-*
                      C++++ C     +Cv+p       g C C++g    ++Ga+C   
   mKIAA0149    67    CegpdaCRK-EEVCVKP-------GLCRCKPG----FFGAQC    96   

EGF_2: domain 2 of 9, from 113 to 139: score 12.4, E = 0.89
                   *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-*
                      C+C+  +G+C+        +g C+C +     y G  C   
   mKIAA0149   113    CpCHP-RGQCEPA------TGDCQCQPN----YWGRLC    139  

EGF_2: domain 3 of 9, from 143 to 169: score 17.7, E = 0.23
                   *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-*
                      C+C+  hG+C+        +g C+Cd+g    +  ++C   
   mKIAA0149   143    CtCGP-HGQCDPK------TGLCHCDPG----WWSPTC    169  

EGF_2: domain 4 of 9, from 173 to 199: score 10.0, E = 1.6
                   *->C.Cngs..hGtCvspngtstpcgkCvCdsgyedkyqGadC<-*
                      C+Cn + ++  C+        +g CvC++g    + G  C   
   mKIAA0149   173    CqCN-PasR--CDQA------TGTCVCPPG----WWGRRC    199  

EGF_2: domain 5 of 9, from 203 to 228: score 2.3, E = 12
                   *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-*
                      C+C+     C  +       g+CvC +g    + G+ C   
   mKIAA0149   203    CnCHT-S-PCMQD------SGRCVCLPG----WWGPEC    228  

EGF_2: domain 6 of 9, from 232 to 257: score 17.4, E = 0.25
                   *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-*
                      C+C   +G+C  +       g+C+C++g    ++G  C   
   mKIAA0149   232    CqCV--RGQCSVT------SGHCSCPPG----FHGIRC    257  

EGF_2: domain 7 of 9, from 274 to 302: score 3.5, E = 8.7
                   *->C..CngshGtCvspngtstpcgkC.vCdsgyedkyqGadC<-*
                      C++C   + tC  p+     +g+C++C++g    + G +C   
   mKIAA0149   274    CghCEL-NATCS-PV-----TGNCeSCKPG----WNGTQC    302  

EGF_2: domain 8 of 9, from 319 to 347: score 4.7, E = 6.3
                   *->C..CngshGtCvspngtstpcgkCv.CdsgyedkyqGadC<-*
                      C++C   +  C         +g+C++Cd+g    + G  C   
   mKIAA0149   319    CprCRL-GEPCQAE------TGHCQhCDPG----WLGHRC    347  

EGF_2: domain 9 of 9, from 364 to 390: score 17.3, E = 0.25
                   *->C..CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-*
                      C+ C   +GtC+        +g CvC+ g    y G  C   
   mKIAA0149   364    CpaCA--QGTCDAV------TGECVCSAG----YWGTSC    390  

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