hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00784/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0148  ( 722 res)   mbj00784

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ArfGap   Putative GTPase activating protein for Arf     201.3    1.5e-56   1
Ank      Ankyrin repeat                                  30.4    4.3e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ArfGap     1/1      41   166 ..     1   137 []   201.3  1.5e-56
Ank        1/2     208   240 ..     1    33 []    25.2   0.0016
Ank        2/2     241   273 ..     1    33 []     5.2       36

Alignments of top-scoring domains:
ArfGap: domain 1 of 1, from 41 to 166: score 201.3, E = 1.5e-56
                   *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn
                        ++++Lrs+d    +C+DC+  p+P WaSvn G+f+C eC+++HR+
   mKIAA0148    41    GTMSKRLRSSD----VCADCNG-PDPSWASVNRGTFICDECCSVHRS 82   

                   LfGvHiSkVnvRSltLDsWtpeeLrklesckgGNenansfwEsnlddfsl
                   L G+HiS+V  R+l++++W+p+ L+++e   ++N++ans+wE+ l d+++
   mKIAA0148    83 L-GRHISQV--RHLKHTAWPPTLLQMVE--TLYNNGANSIWEHSLLDPAS 127  

                   kpkdsdaaa.v.KCqddrqkyesfiaaKYeeklfvlkeeqee<-*
                   ++++++ a++++K    + ++ +fi+aKY++++fv++++++e   
   mKIAA0148   128 IMSGRRKANpQdK---VHPNKAEFIRAKYQMLAFVHRLPCRE    166  

Ank: domain 1 of 2, from 208 to 240: score 25.2, E = 0.0016
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G TPLH+A++ g++  ++lL  +GAd+  qd    
   mKIAA0148   208    KGSTPLHVASKAGQILQAELLAVYGADPGTQDS    240  

Ank: domain 2 of 2, from 241 to 273: score 5.2, E = 36
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G TP  +A + g++e+++ L++   +l  +     
   mKIAA0148   241    SGKTPVDYARQGGHHELAERLIEIQYELTDRLA    273  

//