hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg04389/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0147 ( 1694 res) mbg04389 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PDZ Domain present in PSD-95, Dlg, and ZO-1/2. 351.4 5.7e-101 4 LRR_PS Leucine-rich repeat, plant-specific subfamil 136.9 2.2e-36 13 LRR_TYP Leucine-rich repeats, typical (most populate 83.2 3.1e-20 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_TYP 1/13 93 114 .. 1 24 [] -0.1 4.2e+02 LRR_TYP 2/13 115 137 .. 1 24 [] 17.2 2.4 LRR_PS 1/13 115 137 .. 1 24 [] 9.3 74 LRR_PS 2/13 138 160 .. 1 24 [] 11.3 41 LRR_TYP 3/13 138 161 .. 1 24 [] 1.2 3e+02 LRR_PS 3/13 161 183 .. 1 24 [] 8.9 83 LRR_TYP 4/13 184 206 .. 1 24 [] 0.0 4.1e+02 LRR_PS 4/13 184 206 .. 1 24 [] 5.5 2.3e+02 LRR_TYP 5/13 207 229 .. 1 24 [] 9.7 27 LRR_PS 5/13 207 229 .. 1 24 [] 11.7 36 LRR_PS 6/13 230 252 .. 1 24 [] 16.1 4.9 LRR_TYP 6/13 230 252 .. 1 24 [] 16.9 2.9 LRR_TYP 7/13 253 275 .. 1 24 [] 25.2 0.0094 LRR_PS 7/13 253 275 .. 1 24 [] 22.0 0.082 LRR_TYP 8/13 276 298 .. 1 24 [] 13.6 9.2 LRR_PS 8/13 276 298 .. 1 24 [] 13.0 24 LRR_PS 9/13 299 321 .. 1 24 [] 9.0 81 LRR_TYP 9/13 299 322 .. 1 24 [] 17.7 1.6 LRR_PS 10/13 322 344 .. 1 24 [] 7.2 1.4e+02 LRR_PS 11/13 345 367 .. 1 24 [] 14.8 13 LRR_TYP 10/13 345 367 .. 1 24 [] 1.3 2.9e+02 LRR_PS 12/13 368 390 .. 1 24 [] 18.7 0.84 LRR_TYP 11/13 368 391 .. 1 24 [] 23.6 0.027 LRR_PS 13/13 391 413 .. 1 24 [] 11.5 39 LRR_TYP 12/13 392 413 .. 1 24 [] 5.4 91 LRR_TYP 13/13 414 437 .. 1 24 [] 3.8 1.4e+02 PDZ 1/4 779 858 .. 1 80 [] 92.6 4.8e-23 PDZ 2/4 913 993 .. 1 80 [] 93.2 3.1e-23 PDZ 3/4 1055 1136 .. 1 80 [] 97.5 1.6e-24 PDZ 4/4 1152 1235 .. 1 80 [] 85.0 9.3e-21 Alignments of top-scoring domains: LRR_TYP: domain 1 of 13, from 93 to 114: score -0.1, E = 4.2e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++L+eL L+ NqL++LP F mKIAA0147 93 -RSLEELLLDANQLRELPKP-FFR 114 LRR_TYP: domain 2 of 13, from 115 to 137: score 17.2, E = 2.4 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nLr+L Ls+N +++LPp++ ++ mKIAA0147 115 LLNLRKLGLSDNEIQRLPPEV-AN 137 LRR_PS: domain 1 of 13, from 115 to 137: score 9.3, E = 74 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L+ L Ls+N + +P++ n mKIAA0147 115 LLNLRKLGLSDNEIQ-RLPPEVAN 137 LRR_PS: domain 2 of 13, from 138 to 160: score 11.3, E = 41 *->LtsLqvLdLsnNnLsGeIPsslgn<-* + +L++Ld+s N + eIP+s+ mKIAA0147 138 FMQLVELDVSRNDIP-EIPESIKF 160 LRR_TYP: domain 3 of 13, from 138 to 161: score 1.2, E = 3e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* +L eLd s+N + ++P+ + + mKIAA0147 138 FMQLVELDVSRNDIPEIPESIKFC 161 LRR_PS: domain 3 of 13, from 161 to 183: score 8.9, E = 83 *->LtsLqvLdLsnNnLsGeIPsslgn<-* ++ L++ d+s+N Ls +P+ + + mKIAA0147 161 CKALEIADFSGNPLS-RLPDGFTQ 183 LRR_TYP: domain 4 of 13, from 184 to 206: score 0.0, E = 4.1e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L +L L++ L++LP ++ ++ mKIAA0147 184 LRSLAHLALNDVSLQALPGDV-GN 206 LRR_PS: domain 4 of 13, from 184 to 206: score 5.5, E = 2.3e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L+sL +L L++ +L +P + gn mKIAA0147 184 LRSLAHLALNDVSLQ-ALPGDVGN 206 LRR_TYP: domain 5 of 13, from 207 to 229: score 9.7, E = 27 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nL +L L N L+sLP+ + + mKIAA0147 207 LANLVTLELRENLLKSLPASL-SF 229 LRR_PS: domain 5 of 13, from 207 to 229: score 11.7, E = 36 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L++L+L +N L ++P+sl+ mKIAA0147 207 LANLVTLELRENLLK-SLPASLSF 229 [output cut off at A = 10 top alignments] //