hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file: /cdna4/rodent/full/goal/mbg/mbg04389/w3open/interpro/cnk_1/seq.in
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Query: mKIAA0147 ( 1694 res) mbg04389
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PDZ Domain present in PSD-95, Dlg, and ZO-1/2. 351.4 5.7e-101 4
LRR_PS Leucine-rich repeat, plant-specific subfamil 136.9 2.2e-36 13
LRR_TYP Leucine-rich repeats, typical (most populate 83.2 3.1e-20 13
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LRR_TYP 1/13 93 114 .. 1 24 [] -0.1 4.2e+02
LRR_TYP 2/13 115 137 .. 1 24 [] 17.2 2.4
LRR_PS 1/13 115 137 .. 1 24 [] 9.3 74
LRR_PS 2/13 138 160 .. 1 24 [] 11.3 41
LRR_TYP 3/13 138 161 .. 1 24 [] 1.2 3e+02
LRR_PS 3/13 161 183 .. 1 24 [] 8.9 83
LRR_TYP 4/13 184 206 .. 1 24 [] 0.0 4.1e+02
LRR_PS 4/13 184 206 .. 1 24 [] 5.5 2.3e+02
LRR_TYP 5/13 207 229 .. 1 24 [] 9.7 27
LRR_PS 5/13 207 229 .. 1 24 [] 11.7 36
LRR_PS 6/13 230 252 .. 1 24 [] 16.1 4.9
LRR_TYP 6/13 230 252 .. 1 24 [] 16.9 2.9
LRR_TYP 7/13 253 275 .. 1 24 [] 25.2 0.0094
LRR_PS 7/13 253 275 .. 1 24 [] 22.0 0.082
LRR_TYP 8/13 276 298 .. 1 24 [] 13.6 9.2
LRR_PS 8/13 276 298 .. 1 24 [] 13.0 24
LRR_PS 9/13 299 321 .. 1 24 [] 9.0 81
LRR_TYP 9/13 299 322 .. 1 24 [] 17.7 1.6
LRR_PS 10/13 322 344 .. 1 24 [] 7.2 1.4e+02
LRR_PS 11/13 345 367 .. 1 24 [] 14.8 13
LRR_TYP 10/13 345 367 .. 1 24 [] 1.3 2.9e+02
LRR_PS 12/13 368 390 .. 1 24 [] 18.7 0.84
LRR_TYP 11/13 368 391 .. 1 24 [] 23.6 0.027
LRR_PS 13/13 391 413 .. 1 24 [] 11.5 39
LRR_TYP 12/13 392 413 .. 1 24 [] 5.4 91
LRR_TYP 13/13 414 437 .. 1 24 [] 3.8 1.4e+02
PDZ 1/4 779 858 .. 1 80 [] 92.6 4.8e-23
PDZ 2/4 913 993 .. 1 80 [] 93.2 3.1e-23
PDZ 3/4 1055 1136 .. 1 80 [] 97.5 1.6e-24
PDZ 4/4 1152 1235 .. 1 80 [] 85.0 9.3e-21
Alignments of top-scoring domains:
LRR_TYP: domain 1 of 13, from 93 to 114: score -0.1, E = 4.2e+02
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
++L+eL L+ NqL++LP F
mKIAA0147 93 -RSLEELLLDANQLRELPKP-FFR 114
LRR_TYP: domain 2 of 13, from 115 to 137: score 17.2, E = 2.4
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L nLr+L Ls+N +++LPp++ ++
mKIAA0147 115 LLNLRKLGLSDNEIQRLPPEV-AN 137
LRR_PS: domain 1 of 13, from 115 to 137: score 9.3, E = 74
*->LtsLqvLdLsnNnLsGeIPsslgn<-*
L +L+ L Ls+N + +P++ n
mKIAA0147 115 LLNLRKLGLSDNEIQ-RLPPEVAN 137
LRR_PS: domain 2 of 13, from 138 to 160: score 11.3, E = 41
*->LtsLqvLdLsnNnLsGeIPsslgn<-*
+ +L++Ld+s N + eIP+s+
mKIAA0147 138 FMQLVELDVSRNDIP-EIPESIKF 160
LRR_TYP: domain 3 of 13, from 138 to 161: score 1.2, E = 3e+02
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
+L eLd s+N + ++P+ + +
mKIAA0147 138 FMQLVELDVSRNDIPEIPESIKFC 161
LRR_PS: domain 3 of 13, from 161 to 183: score 8.9, E = 83
*->LtsLqvLdLsnNnLsGeIPsslgn<-*
++ L++ d+s+N Ls +P+ + +
mKIAA0147 161 CKALEIADFSGNPLS-RLPDGFTQ 183
LRR_TYP: domain 4 of 13, from 184 to 206: score 0.0, E = 4.1e+02
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L++L +L L++ L++LP ++ ++
mKIAA0147 184 LRSLAHLALNDVSLQALPGDV-GN 206
LRR_PS: domain 4 of 13, from 184 to 206: score 5.5, E = 2.3e+02
*->LtsLqvLdLsnNnLsGeIPsslgn<-*
L+sL +L L++ +L +P + gn
mKIAA0147 184 LRSLAHLALNDVSLQ-ALPGDVGN 206
LRR_TYP: domain 5 of 13, from 207 to 229: score 9.7, E = 27
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L nL +L L N L+sLP+ + +
mKIAA0147 207 LANLVTLELRENLLKSLPASL-SF 229
LRR_PS: domain 5 of 13, from 207 to 229: score 11.7, E = 36
*->LtsLqvLdLsnNnLsGeIPsslgn<-*
L +L++L+L +N L ++P+sl+
mKIAA0147 207 LANLVTLELRENLLK-SLPASLSF 229
[output cut off at A = 10 top alignments]
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