hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg04389/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0147 ( 1694 res) mbg04389 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PDZ PDZ domain (Also known as DHR or GLGF) 311.8 8e-90 4 LRR_1 Leucine Rich Repeat 132.2 9.3e-36 15 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_1 1/15 94 116 .. 1 25 [] 10.8 33 LRR_1 2/15 117 139 .. 1 25 [] 14.1 3.5 LRR_1 3/15 140 162 .. 1 25 [] 13.1 6.6 LRR_1 4/15 163 185 .. 1 25 [] 11.9 15 LRR_1 5/15 186 208 .. 1 25 [] 3.7 4.8e+02 LRR_1 6/15 209 231 .. 1 25 [] 12.8 8.2 LRR_1 7/15 232 254 .. 1 25 [] 16.5 0.64 LRR_1 8/15 255 277 .. 1 25 [] 18.7 0.14 LRR_1 9/15 278 300 .. 1 25 [] 12.0 15 LRR_1 10/15 301 323 .. 1 25 [] 8.1 91 LRR_1 11/15 324 346 .. 1 25 [] 2.6 7.5e+02 LRR_1 12/15 347 369 .. 1 25 [] 13.5 5.2 LRR_1 13/15 370 392 .. 1 25 [] 12.7 9.1 LRR_1 14/15 393 415 .. 1 25 [] 8.9 66 LRR_1 15/15 416 438 .. 1 25 [] 14.1 3.3 PDZ 1/4 771 855 .. 1 82 [] 82.6 8.2e-21 PDZ 2/4 908 990 .. 1 82 [] 79.4 7.3e-20 PDZ 3/4 1047 1133 .. 1 82 [] 84.0 3.1e-21 PDZ 4/4 1143 1232 .. 1 82 [] 72.9 6.7e-18 Alignments of top-scoring domains: LRR_1: domain 1 of 15, from 94 to 116: score 10.8, E = 33 *->nLeeLdLsgCNpslsgslppsl.glp<-* +LeeL L+ N +l ++lp+ + l mKIAA0147 94 SLEELLLDA-N-QL-RELPKPFfRLL 116 LRR_1: domain 2 of 15, from 117 to 139: score 14.1, E = 3.5 *->nLeeLdLsgCNpslsgslppsl.glp<-* nL++L Ls+ N +++ lpp+ ++ mKIAA0147 117 NLRKLGLSD-N-EIQ-RLPPEVaNFM 139 LRR_1: domain 3 of 15, from 140 to 162: score 13.1, E = 6.6 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L eLd+s+ N + +++p+s++ ++ mKIAA0147 140 QLVELDVSR-N-DI-PEIPESIkFCK 162 LRR_1: domain 4 of 15, from 163 to 185: score 11.9, E = 15 *->nLeeLdLsgCNpslsgslppsl.glp<-* Le+ d+sg N +ls lp+++ l+ mKIAA0147 163 ALEIADFSG-N-PLS-RLPDGFtQLR 185 LRR_1: domain 5 of 15, from 186 to 208: score 3.7, E = 4.8e+02 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L +L L++ sl+ lp + ++l mKIAA0147 186 SLAHLALND-V-SLQ-ALPGDVgNLA 208 LRR_1: domain 6 of 15, from 209 to 231: score 12.8, E = 8.2 *->nLeeLdLsgCNpslsgslppsl.glp<-* nL +L+L+ N l +slp+sl+ l mKIAA0147 209 NLVTLELRE-N-LL-KSLPASLsFLV 231 LRR_1: domain 7 of 15, from 232 to 254: score 16.5, E = 0.64 *->nLeeLdLsgCNpslsgslppsl.glp<-* +Le LdL+g N l+ lp+ l+ lp mKIAA0147 232 KLEQLDLGG-N-DLE-VLPDTLgALP 254 LRR_1: domain 8 of 15, from 255 to 277: score 18.7, E = 0.14 *->nLeeLdLsgCNpslsgslppsl.glp<-* nL+eL L++ N +ls lpp+l++l+ mKIAA0147 255 NLRELWLDR-N-QLS-ALPPELgNLR 277 LRR_1: domain 9 of 15, from 278 to 300: score 12.0, E = 15 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L Ld+s N +l+ +lp +l+gl mKIAA0147 278 RLVCLDVSE-N-RLE-ELPVELgGLA 300 LRR_1: domain 10 of 15, from 301 to 323: score 8.1, E = 91 *->nLeeLdLsgCNpslsgslppsl.glp<-* L+ L Ls N l+ lp++++ l+ mKIAA0147 301 LLTDLLLSQ-N-LLQ-RLPEGIgQLK 323 LRR_1: domain 11 of 15, from 324 to 346: score 2.6, E = 7.5e+02 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L +L ++ N +l ++ + ++++ mKIAA0147 324 QLSILKVDQ-N-RLC-EVTEAIgDCE 346 LRR_1: domain 12 of 15, from 347 to 369: score 13.5, E = 5.2 *->nLeeLdLsgCNpslsgslppsl.glp<-* nL eL L N l+ lp sl++l+ mKIAA0147 347 NLSELILTE-N-LLT-ALPHSLgKLT 369 LRR_1: domain 13 of 15, from 370 to 392: score 12.7, E = 9.1 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L++L++++ N +l+ lpp+++g+ mKIAA0147 370 KLTNLNVDR-N-HLE-VLPPEIgGCV 392 LRR_1: domain 14 of 15, from 393 to 415: score 8.9, E = 66 *->nLeeLdLsgCNpslsgslppsl.glp<-* L +L+L++ N +l lpp+l + mKIAA0147 393 ALSVLSLRD-N-RLA-VLPPELaHTA 415 LRR_1: domain 15 of 15, from 416 to 438: score 14.1, E = 3.3 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L +Ld+ g N +l +slp l +l mKIAA0147 416 ELHVLDVAG-N-RL-RSLPFALtHLN 438 PDZ: domain 1 of 4, from 771 to 855: score 82.6, E = 8.2e-21 *->evtlekevkrgglGfsikggsdk........givvsevlpGsgaAea ++t+ + + gglG+si+gg+ ++ +++++gi++s+v++ g+A++ mKIAA0147 771 TLTIVR--QTGGLGISIAGGKGStpykgddeGIFISRVSEE-GPAAR 814 gGrLkeGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-* +G ++GD++l+vNG+ + + +h +av+al+g+g v++ ++ mKIAA0147 815 AG-VRVGDKLLEVNGVALQDAEHHEAVEALRGAGA-AVQMRVW 855 PDZ: domain 2 of 4, from 908 to 990: score 79.4, E = 7.3e-20 *->evtlekevkrgglGfsikggsdk........givvsevlpGsgaAea +v+ ek glGfsi+gg+ ++ + +++gi++s++ +G gaA++ mKIAA0147 908 LVRSEK-----GLGFSIAGGKGStpyragdgGIFISRIAEG-GAAHR 948 gGrLkeGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-* +G L++GD++ls+NG+d++ +h+ av +l+ ++ +++L+++ mKIAA0147 949 AGTLQVGDRVLSINGVDMTEARHDHAVSLLTAASP-TISLLLE 990 PDZ: domain 3 of 4, from 1047 to 1133: score 84.0, E = 3.1e-21 *->evtlekevkrgglGfsikggsdk..........givvsevlpGsgaA e+ l++ +g+lG+si+ggsd+++++ + +++g+++s+vlp g A mKIAA0147 1047 EICLPR--AGGPLGLSIVGGSDHsshpfgvqdpGVFISKVLPR-GLA 1090 eagGrLkeGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-* ++ G L++GD+Il+vNGqdv+ +h +av al ++ e++L+++ mKIAA0147 1091 ARCG-LRVGDRILAVNGQDVREATHQEAVSALLRPCL-ELCLLVR 1133 PDZ: domain 4 of 4, from 1143 to 1232: score 72.9, E = 6.7e-18 *->evtlekevkrgglGfsikggsdk...........givvsevlpGsga e+ ++k +++lG+si+gg +++ +++ +++++gi++s+v+p ga mKIAA0147 1143 ELCIQKA-PGEKLGISIRGGAKGhagnpcdptdeGIFISKVSPT-GA 1187 AeagGrLkeGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-* A ++GrL++G ++l+vN+q++ +l+h++av++l++ g+ ++t+++ mKIAA0147 1188 AGRDGRLRVGLRLLEVNQQSLLGLTHAEAVQLLRSVGD-TLTVLVC 1232 //