hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mej/mej00228/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0141  ( 525 res)   mej00228

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sel1     Sel1 repeat                                    112.6    7.6e-30   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sel1       1/5     261   292 ..     1    58 []    10.8      4.6
Sel1       2/5     293   328 ..     1    58 []    42.7    8e-09
Sel1       3/5     329   366 ..     1    58 []    18.3     0.19
Sel1       4/5     367   400 ..     1    58 []    12.2      3.1
Sel1       5/5     401   436 ..     1    58 []    33.3  5.5e-06

Alignments of top-scoring domains:
Sel1: domain 1 of 5, from 261 to 292: score 10.8, E = 4.6
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      a   + LG           +           ++       Dy    A
   mKIAA0141   261    AiTFNFLG-------T---EN----------IKTG-----DYTA--A 280  

                   lkwyekAAeqGn<-*
                   + +++kAA++G+   
   mKIAA0141   281 FSYFQKAADRGY    292  

Sel1: domain 2 of 5, from 293 to 328: score 42.7, E = 8e-09
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      ++Aqyn+G       +++++G+      G  +p+      D+ k  A
   mKIAA0141   293    SkAQYNVG-------LCLEHGR------G--TPR------DLSK--A 316  

                   lkwyekAAeqGn<-*
                   + +y++AA qG+   
   mKIAA0141   317 ILFYHLAAVQGH    328  

Sel1: domain 3 of 5, from 329 to 366: score 18.3, E = 0.19
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      + Aqy+++       +++l+        G           D+e++ A
   mKIAA0141   329    SlAQYRYA-------RCLLQSP------G--SLS------DPERERA 354  

                   lkwyekAAeqGn<-*
                   + ++++AA+ G    
   mKIAA0141   355 VSLLKQAADSGL    366  

Sel1: domain 4 of 5, from 367 to 400: score 12.2, E = 3.1
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                       +Aq  LG        l+ +  +                 D ++  A
   mKIAA0141   367    TeAQAFLG-------VLFTKEPH--------L--------DEQR--A 388  

                   lkwyekAAeqGn<-*
                   +k++ +AA +G+   
   mKIAA0141   389 VKYLWLAASNGD    400  

Sel1: domain 5 of 5, from 401 to 436: score 33.3, E = 5.5e-06
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      +++ + LG        +y++Gl      G    +      ++ +  A
   mKIAA0141   401    SqSRFHLG-------ICYEKGL------G--AQR------NLGE--A 424  

                   lkwyekAAeqGn<-*
                   +k+y++AA++Gn   
   mKIAA0141   425 VKCYQQAAAMGN    436  

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