hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01050/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0139  ( 857 res)   mpj01050

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PINT     motif in proteasome subunits, Int-6, Nip-1 a    74.9      1e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PINT       1/1     432   512 ..     1    92 []    74.9    1e-17

Alignments of top-scoring domains:
PINT: domain 1 of 1, from 432 to 512: score 74.9, E = 1e-17
                   *->qhverLqrkiretnllqlsepYPssislsdlakllglsvpeevEklv
                      q+v++Lq++ +++ l+q++++Y +si++s+l +l+++  ++++E+ +
   mKIAA0139   432    QYVPQLQNNTILRLLQQVAQIY-QSIEFSRLTSLVPFVDAFQLERAI 477  

                   skaIrdgeisakIDqvngivefeevdpryltsnqlaqlaerlkkl<-*
                   ++a r++ ++ +ID+ +++++f+++           ++a+r ++    
   mKIAA0139   478 VDAARHCDLQVRIDHTSRTLSFGSD----------LNYATREDAP    512  

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