hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01050/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0139  ( 857 res)   mpj01050

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PCI      PCI domain                                      59.2    8.9e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PCI        1/1     371   501 ..     1   135 []    59.2  8.9e-14

Alignments of top-scoring domains:
PCI: domain 1 of 1, from 371 to 501: score 59.2, E = 8.9e-14
                   *->payleLleafysgd.laefeelladh.................Vv.A
                      p  + L++ +++ + l+ ++ +++d+ +  + + ++ +  ++ ++ +
   mKIAA0139   371    PTRIGLINDMVRFSvLQYVVPEVKDLynwlevefnplklcervTKvL 417  

                   .kamkGwqkeeellqdpglaekvwlegdkhleeLrrkirelnllqlakft
                   +++      +e+  + p l++        ++++L+++ ++++l+q+a+  
   mKIAA0139   418 nWV------REQPEKEPELQQ--------YVPQLQNNTILRLLQQVAQ-- 451  

                   ypapyssislsdlaellglsvvedvlqdevEkilsklIadgrirgkIDqv
                      +y+si +s+l +l+ +  +      ++E+ ++++ ++  ++ +ID+ 
   mKIAA0139   452 ---IYQSIEFSRLTSLVPFVDA-----FQLERAIVDAARHCDLQVRIDHT 493  

                   ngivvvse<-*
                   ++++ +     
   mKIAA0139   494 SRTLSFGS    501  

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