hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj23031/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0138  ( 584 res)   mfj23031

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM      RNA recognition motif                           80.3    2.4e-19   1
SAP      Putative DNA-binding (bihelical) motif predi    50.5    2.1e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAP        1/1      63    97 ..     1    35 []    50.5  2.1e-10
RRM        1/1     473   546 ..     1   121 []    80.3  2.4e-19

Alignments of top-scoring domains:
SAP: domain 1 of 1, from 63 to 97: score 50.5, E = 2.1e-10
                   *->lskLkVseLkdeLkkrGLstsGrKaeLvkRLleal<-*
                      ls L+V +L++eLkkr+L+t+G+K++L++RL++a    
   mKIAA0138    63    LSDLRVIDLRAELKKRNLDTGGNKSVLMERLRKAF    97   

RRM: domain 1 of 1, from 473 to 546: score 80.3, E = 2.4e-19
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +l+V++L  ++++   dL+ lF              sk+Gkv+ +++
   mKIAA0138   473    NLWVSGL--SSSTRAADLKSLF--------------SKHGKVIGAKV 503  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   v++                       +   ++++FV++++ ++A k+  i
   mKIAA0138   504 VTNAR---------------------SPGARCYGFVTMSTSDEATKC--I 530  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++l+    +el  +Gr+   + Ve   
   mKIAA0138   531 SHLH---RTEL--HGRM---ISVE    546  

//