hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj23031/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0138  ( 584 res)   mfj23031

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or     62.2    1.1e-14   1
SAP      SAP domain                                      55.6    1.1e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAP        1/1      63    97 ..     1    35 []    55.6  1.1e-12
RRM_1      1/1     474   545 ..     1    74 []    62.2  1.1e-14

Alignments of top-scoring domains:
SAP: domain 1 of 1, from 63 to 97: score 55.6, E = 1.1e-12
                   *->lskLkVseLKeeLkkrGLstsGkKaeLveRLleal<-*
                      ls L+V +L++eLkkr+L+t+G+K++L+eRL++a+   
   mKIAA0138    63    LSDLRVIDLRAELKKRNLDTGGNKSVLMERLRKAF    97   

RRM_1: domain 1 of 1, from 474 to 545: score 62.2, E = 1.1e-14
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l+V++L+ +t  +dLk lFsk+G+++ +k+v++        + ++FV
   mKIAA0138   474    LWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTN--ARSPGARCYGFV 518  

                   eFedeedAekAldalnGkelggrelrv<-*
                   ++ ++++A+k+++ l+ +el gr + v   
   mKIAA0138   519 TMSTSDEATKCISHLHRTELHGRMISV    545  

//