hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mng/mng12175/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0136  ( 984 res)   mng12175

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
zf-CW     CW-type Zinc Finger                            81.0    2.4e-20   1
HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90    -0.8       0.81   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
HATPase_c   1/1      66   156 ..     1   127 []    -0.8     0.81
zf-CW       1/1     450   495 ..     1    55 []    81.0  2.4e-20

Alignments of top-scoring domains:
HATPase_c: domain 1 of 1, from 66 to 156: score -0.8, E = 0.81
                   *->gdedrLrqvlsNLldNAikhapaggeitvrlerdgdrlritVeDnGp
                      +  ++   ++ +L+dNA +     ++i++  +   d++++t +DnG 
   mKIAA0136    66    TSHTWPFSAVAELIDNAYDPDVNAKQIWIDKTVISDHICLTFTDNGN 112  

                   GIppehkisiedleriFepFyrtdgpsaesladsrrkigGGLtGLGLaiv
                   G+++      ++l +++  +++ +                          
   mKIAA0136   113 GMTA------DKLHKMLSFGFSDK--------------VT---------- 132  

                   kelvelhgGtitvesepggGttftltlPla<-*
                         ++G++ v    +g    +++l ++   
   mKIAA0136   133 ------MNGHVPVGLYGNGFKSGSMRLGKD    156  

zf-CW: domain 1 of 1, from 450 to 495: score 81.0, E = 2.4e-20
                   *->dfWVQCDPdClKWRkLPtelnyedIREnllpdkWtCsmnpwdplgns
                      ++WVQCD  ClKWRkLP+ +   d    +lp+kW+Cs+np dp++ +
   mKIAA0136   450    QTWVQCD-ACLKWRKLPDGI---D----QLPEKWYCSNNP-DPQFRN 487  

                   Csdpeele<-*
                   C++pee e   
   mKIAA0136   488 CEVPEEPE    495  

//