hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02208/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0134  ( 1167 res)   mbh02208

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d   109.2    4.7e-28   1
HELICc   helicase superfamily c-terminal domain          71.7    9.4e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEXDc      1/1     172   365 ..     1   219 []   109.2  4.7e-28
HELICc     1/1     422   520 ..     1    86 []    71.7  9.4e-17

Alignments of top-scoring domains:
DEXDc: domain 1 of 1, from 172 to 365: score 109.2, E = 4.7e-28
                   *->gf.klrpyQk..eaipwlleg..........rdvilaapTGsGKTla
                       f++l + Q++++a+p++  g++  ++ +++++v++a++TG+GK+++
   mKIAA0134   172    AFgRLAKLQRerAALPIAQYGnrilqtlkehQVVVVAGDTGCGKSTQ 218  

                   fllpllellkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslg
                    +++ll ++ ++            v +++P+r++++ +a+++        
   mKIAA0134   219 VPQYLLAAGFSH------------VACTQPRRIACISLAKRVG------- 249  

                   vyfvevlkvvglygG.sktkekeqlrklksgkt.dilvtTpgrLldll.n
                         +++++ yg++     ++++ + ++ ++++i++ T g Ll+ +++
   mKIAA0134   250 ------FESLSQYGSqVG---YQIRFESTRSAAtKIVFLTVGLLLRQIqR 290  

                   gkglsl.nldlvilDEaHrlldmgsggdhgfgdqle.llkrl...pknrq
                   ++  sl++++++i+DE+H++          + d l+++l+rl +++++++
   mKIAA0134   291 EP--SLpQYQVLIVDEVHERH--------LHNDFLLgVLQRLlpqRPDLK 330  

                   rlllSATppeienllklflnlpelfpnpvfisvgftlepieqf<-*
                   ++l+SAT+ +i  ++++f +      +pv+ ++g+ l+pi+++   
   mKIAA0134   331 VILMSATI-NISLFSSYFSH------APVVQVPGR-LFPITVV    365  

HELICc: domain 1 of 1, from 422 to 520: score 71.7, E = 9.4e-17
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                       + +  L+++       v++lH+ ls ++++++++  ++g +k++++
   mKIAA0134   422    AQAYASLTQR-----WVVLPLHSALSVSDQDKVFDVAPAGVRKCILS 463  

                   TdvaerGlDipgvdlVInydl..................pwspasyiQRi
                   T++ae++++i+g+++V++ +  ++ + +++ + ++ ++ ++s as+ QR 
   mKIAA0134   464 TNIAETSVTIDGIRFVVDSGKvkemsydpqaklqrlqefWISQASAEQRK 513  

                   GRaGRaG<-*
                   GRaGR G   
   mKIAA0134   514 GRAGRTG    520  

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