hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh02208/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0134 ( 1167 res) mbh02208 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- DUF1605 Domain of unknown function (DUF1605) 82.7 7.6e-21 1 HA2 Helicase associated domain (HA2) 82.0 1.3e-20 1 Helicase_C Helicase conserved C-terminal domain 61.4 1.9e-14 1 DEAD DEAD/DEAH box helicase 18.6 6.3e-06 1 NACHT NACHT domain -44.1 0.72 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DEAD 1/1 192 343 .. 1 266 [] 18.6 6.3e-06 NACHT 1/1 203 373 .. 1 210 [] -44.1 0.72 Helicase_C 1/1 427 520 .. 1 76 [] 61.4 1.9e-14 HA2 1/1 580 670 .. 1 124 [] 82.0 1.3e-20 DUF1605 1/1 709 933 .. 1 140 [] 82.7 7.6e-21 Alignments of top-scoring domains: DEAD: domain 1 of 1, from 192 to 343: score 18.6, E = 6.3e-06 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ptpiQaeaipaileneGfalredvlssggmdrlvlqApTGSGKTlaf ++i ++++ e v+ v++++TG GK++ mKIAA0134 192 GNRI-LQTLK-----EH-----QVV--------VVAGDTGCGKSTQV 219 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx llPilygqrllkgpksarggksqgggknergfkidspqalvlaPTreLae +l + + + P+r + mKIAA0134 220 PQYLL--AAGF-------------------------SHVACTQPRRIACI 242 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx QiyeelkkllkilalsplgvnellrrigtglrvavlslyGGsslkdqldk ++++ + s++ + mKIAA0134 243 SLAKRVG-------------------------------FESLSQYGSQVG 261 RF x xxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx l.rgkres.kggpdIvvgTPgrLldllrngrinikievssertgkl.klk ++ +++ +++ ++Iv T g Ll+ + +r ++l mKIAA0134 262 YqIRFESTrSAATKIVFLTVGLLLRQI-------------QR---EpSLP 295 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx nlkhlkllVlDEahrlldmghgFgedleeilrrlprneplraqllgtilH + + l++DE+h + h + + l +l+rl + mKIAA0134 296 QY---QVLIVDEVH---E-RHLHNDFLLGVLQRLLP-------------- 324 RF xxxxxxxxxxxxxxxxxxxxxx qkpniQtllfSATlpprevedl<-* q+p+++++l+SAT+ + + mKIAA0134 325 QRPDLKVILMSATI-NI--SLF 343 NACHT: domain 1 of 1, from 203 to 373: score -44.1, E = 0.72 *->rtvilqGeAGsGKTtLlqklallWaqgklpqgarfdfvFflscrels ++v++ G+ G+GK+t + + l+++ ++ + + + + +++s mKIAA0134 203 QVVVVAGDTGCGKSTQVPQYLLAAGFSHVACTQ------PRRIACIS 243 rsgeaaalLrsLadlLfsqwpepaapvre.........Klf.eskvwavl ++ + l sq+ +++ +++++ +K+ ++ ++ mKIAA0134 244 LAKRV-----GFESL--SQYGSQVGYQIRfestrsaatKIVfLTVGLLLR 286 lelperlLkSaldppgqttvlilDGlDElvsdlgqpdgelctdwkepqpv + + e L q +vli+D E + ++++ + mKIAA0134 287 QIQREPSL-------PQYQVLIVDEVHERHLHNDF--------------L 315 rtLLssLlrkkLlpgaslLlTsRPdalrkwllrrgLespakRLLELqear ++ L Ll+ p +++l s + + +l +++++ mKIAA0134 316 LGVLQRLLPQ--RPDLKVILMSATINI--SLFSSYFSHA----------P 351 ylevrgFseedrkeyvrkyfsde<-* +++v+g ++ +++y + +d+ mKIAA0134 352 VVQVPGRLFPITVVY-QPQEADQ 373 Helicase_C: domain 1 of 1, from 427 to 520: score 61.4, E = 1.9e-14 *->ll.epgikvarlhGglsqeeReeilekFrsgkskvLvaTdvaarGlD l+++ + v++lh+ ls ++++++++ +g +k++++T++a+++++ mKIAA0134 427 SLtQR-WVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIAETSVT 472 ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<- i ++++V++ + ++ + +++ + ++ ++ + + +s QR GRaGR G mKIAA0134 473 IDGIRFVVDSGKvkemsydpqaklqrlqefWISQASAEQRKGRAGRTG 520 * mKIAA0134 - - HA2: domain 1 of 1, from 580 to 670: score 82.0, E = 1.3e-20 *->aAlelLyeLgAlrDsdgeLTsplGrlmarlPldPrLgkmLvllaalf +A+ L+e gAl Ds+++LT p+G l+a+lP+d+ +gkmL +l+ f mKIAA0134 580 TAILYLQEQGAL-DSSEALT-PIGSLLAQLPVDVVIGKML-ILGSMF 623 gcldealiiaaiLsvrgspfvntGvDRdaqrlpldksekakrWNiSrdla +++++l+iaa+Lsv +spf + ++ mKIAA0134 624 SLAEPVLTIAAALSV-QSPFTR------------------------SAQS 648 rakfegrsleksars.r.lts.lsDhlall<-* + a+++r+l+s+++D+++l mKIAA0134 649 NLDC--------ATArRpLESdQGDPFTLF 670 DUF1605: domain 1 of 1, from 709 to 933: score 82.7, E = 7.6e-21 *->kQLlrilkrlglp.................................. +Q++++l+++gl+++ + ++++ ++ +++++++ ++ +++++++ mKIAA0134 709 RQFKELLEDHGLLsgaqvvapgdsysrlqqrrerralhqlkrqheeg 755 .................................................. ++++++ + ++++ ++++++++++++++ ++ + ++ + + +++ ++ + mKIAA0134 756 ggrrrkvlrlqedgcssdeedrkgstsqradsvdiqdvkfklrhnleqlq 805 ......lnsssgdiellrkailaGlypNvArr........esdrggkgsY ++ + ++ ++ +ll+ ++ Glyp++A+ + ++++++sd mKIAA0134 806 aaassaQDLTRDQLALLKLVLGRGLYPQLAVPdafnsgrkDSD------- 848 ktlrsvrlpvrkkanisdvkdgeekg.fkt.ndgnVsiHPsSvLfn.... + f+t++++ +HP++v++n+++ mKIAA0134 849 -------------------------QiFHTqAKQGTVLHPTCVFANspev 873 ...................tkkkppkwvvytelvetskkgdgskvYardv ++++++ ++++++++++++++ +++++ +++l+et+k +Y++++ mKIAA0134 874 lhtqgqeasgqegsqdgrdQMSCKHQLLAFVSLLETNK------PYLVNC 917 taispewllllapgki<-* +i++ + lll++++i mKIAA0134 918 VRIPALQSLLLFSRSI 933 //