hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfk/mfk00029/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0132 ( 637 res) mfk00029 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kelch_1 Kelch motif 344.3 1.4e-99 6 BACK BTB And C-terminal Kelch 169.9 4.3e-47 1 BTB BTB/POZ domain 146.5 4.5e-40 1 Kelch_2 Kelch motif 132.0 1.1e-35 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 80 192 .. 1 135 [] 146.5 4.5e-40 BACK 1/1 197 299 .. 1 103 [] 169.9 4.3e-47 Kelch_1 1/6 328 372 .. 1 45 [] 29.4 8.3e-05 Kelch_2 1/6 326 372 .. 1 54 [] 7.3 28 Kelch_1 2/6 374 423 .. 1 45 [] 62.2 1.1e-14 Kelch_2 2/6 374 423 .. 1 54 [] 31.5 2e-05 Kelch_1 3/6 425 470 .. 1 45 [] 57.3 3.3e-13 Kelch_2 3/6 425 470 .. 1 54 [] 20.0 0.056 Kelch_1 4/6 472 517 .. 1 45 [] 65.4 1.2e-15 Kelch_2 4/6 472 517 .. 1 54 [] 18.7 0.14 Kelch_1 5/6 519 564 .. 1 45 [] 73.2 5.5e-18 Kelch_2 5/6 519 564 .. 1 54 [] 25.3 0.0015 Kelch_1 6/6 566 611 .. 1 45 [] 69.4 7.3e-17 Kelch_2 6/6 566 611 .. 1 54 [] 34.4 2.7e-06 Alignments of top-scoring domains: BTB: domain 1 of 1, from 80 to 192: score 146.5, E = 4.5e-40 *->lnelreqgelcDVtLvvgdgsgryd.v.gkkfkAHKavLaacSpYFk +nelr++ +lcDVtL+v+ y++++ +f AHK+vLa++Sp+Fk mKIAA0132 80 MNELRLSQQLCDVTLQVK-----YEdIpAAQFMAHKVVLASSSPVFK 121 alFtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdq a+Ft++ e+ ++ ++ +e++ p+++e l+ef+Yt+ +s+ mKIAA0132 122 AMFTNG------LREQGME-VVSIEGIHPKVMERLIEFAYTASISVG--- 161 ksPssckseenvedlLalAadllqipslvdkCeefliksl<-* e+ v +++ A ++qi+s+v++C +fl+++l mKIAA0132 162 --------EKCVLHVMNGA-VMYQIDSVVRACSDFLVQQL 192 BACK: domain 1 of 1, from 197 to 299: score 169.9, E = 4.3e-47 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie ++gI +fA++ gc+eL+++A+++i +F eVak+eEF++Ls++qL + mKIAA0132 197 AIGIANFAEQIGCTELHQRAREYIYMHFGEVAKQEEFFNLSHCQLAT 243 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky l+s+D+LnV++E eVf+A++ Wvk+d ++R+ ++ LL++VR++ L+p + mKIAA0132 244 LISRDDLNVRCESEVFHACIDWVKYDCPQRRFYVQALLRAVRCHALTPRF 293 Llevve<-* L+++++ mKIAA0132 294 LQTQLQ 299 Kelch_1: domain 1 of 6, from 328 to 372: score 29.4, E = 8.3e-05 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- + + + ++ +iY +GGy qsl+ e+Y+p++++W +l++++ mKIAA0132 328 QAVPCRAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGSWLRLADLQ 372 * mKIAA0132 - - Kelch_2: domain 1 of 6, from 326 to 372: score 7.3, E = 28 *->pryphasvvp..ggklyvvGGsfkgnrgtgngdesssdllvldpetn p+ + ++ p+ g +y GG+ + s+s l ++p+ mKIAA0132 326 PTQAVPCRAPkvGRLIYTAGGY---------FRQSLSYLEAYNPSNG 363 vWeklpalp<-* +W +l++l mKIAA0132 364 SWLRLADLQ 372 Kelch_1: domain 2 of 6, from 374 to 423: score 62.2, E = 1.1e-14 *->pRsgagvvvldgkiYviGGydg.....qslnsvevYDpetntWtklp pRsg + +v++g++Y++GG+++++++++ ++ ++Y+p+tn+W++++ mKIAA0132 374 PRSGLAGCVVGGLLYAVGGRNNspdgnTDSSALDCYNPMTNQWSPCA 420 smp<-* sm+ mKIAA0132 421 SMS 423 Kelch_2: domain 2 of 6, from 374 to 423: score 31.5, E = 2e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr++ a +v+gg ly vGG+ ++++g+ +ss l +++p tn+W mKIAA0132 374 PRSGLAGCVVGGLLYAVGGR----NNSPDGNTDSSALDCYNPMTNQW 416 eklpalp<-* ++++++ mKIAA0132 417 SPCASMS 423 Kelch_1: domain 3 of 6, from 425 to 470: score 57.3, E = 3.3e-13 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pR + gv v+dg+iY++GG+ g +sve+Y pe ++W+ +++m mKIAA0132 425 PRNRIGVGVIDGHIYAVGGSHGcIHHSSVERYEPERDEWHLVAPML 470 -* mKIAA0132 - - Kelch_2: domain 3 of 6, from 425 to 470: score 20.0, E = 0.056 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr + + v++g +y vGGs +g +s++ ++ pe +W mKIAA0132 425 PRNRIGVGVIDGHIYAVGGS--------HGCIHHSSVERYEPERDEW 463 eklpalp<-* + ++++ mKIAA0132 464 HLVAPML 470 Kelch_1: domain 4 of 6, from 472 to 517: score 65.4, E = 1.2e-15 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R g+gv+vl+ ++Y++GG+dg+++lns+e+Y pe n+W+++++m+ mKIAA0132 472 RRIGVGVAVLNRLLYAVGGFDGtNRLNSAECYYPERNEWRMITPMN 517 -* mKIAA0132 - - Kelch_2: domain 4 of 6, from 472 to 517: score 18.7, E = 0.14 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r ++ ++v++ ly vGG+ +g ++++ ++ pe n+W mKIAA0132 472 RRIGVGVAVLNRLLYAVGGF--------DGTNRLNSAECYYPERNEW 510 eklpalp<-* + ++++ mKIAA0132 511 RMITPMN 517 Kelch_1: domain 5 of 6, from 519 to 564: score 73.2, E = 5.5e-18 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< Rsgagv+vl+++iY++GGydg+ lnsve+YD+et tWt++++m+ mKIAA0132 519 IRSGAGVCVLHNCIYAAGGYDGqDQLNSVERYDVETETWTFVAPMR 564 -* mKIAA0132 - - Kelch_2: domain 5 of 6, from 519 to 564: score 25.3, E = 0.0015 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++ ++v+ +++y GG+ +g + ++++ ++d et++W mKIAA0132 519 IRSGAGVCVLHNCIYAAGGY--------DGQDQLNSVERYDVETETW 557 eklpalp<-* + ++++ mKIAA0132 558 TFVAPMR 564 Kelch_1: domain 6 of 6, from 566 to 611: score 69.4, E = 7.3e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rs g++v++gkiYv GGydg+++l+sve+YDp+++tW++++ m+ mKIAA0132 566 HRSALGITVHQGKIYVLGGYDGhTFLDSVECYDPDSDTWSEVTRMT 611 -* mKIAA0132 - - Kelch_2: domain 6 of 6, from 566 to 611: score 34.4, E = 2.7e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r+ ++v +gk+yv GG+ +g +++++ ++dp++ +W mKIAA0132 566 HRSALGITVHQGKIYVLGGY--------DGHTFLDSVECYDPDSDTW 604 eklpalp<-* ++++++ mKIAA0132 605 SEVTRMT 611 //