hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03533/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0131  ( 935 res)   mbh03533

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   GTPase-activator protein for Rho-like GTPase   211.6    6.9e-59   1
FCH      Fes/CIP4 homology domain                        78.4    8.8e-19   1
SH3      Src homology 3 domains                          68.7    7.5e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FCH        1/1       1   103 [.     1   103 []    78.4  8.8e-19
RhoGAP     1/1     509   683 ..     1   193 []   211.6  6.9e-59
SH3        1/1     740   795 ..     1    58 []    68.7  7.5e-16

Alignments of top-scoring domains:
FCH: domain 1 of 1, from 1 to 103: score 78.4, E = 8.8e-19
                   *->mgfwselwsddGfeaLlsrlknglrlledlkkflreRakiEeeYAkk
                       +++++l   +++++L+ + +  + ll++l++f+r+Ra++E eY+++
   mKIAA0131     1    -EMRWQL--SEQLHCLELQGELRRDLLQELAEFMRRRAEVELEYSRG 44   

                   Lqklskkyfnkks....svgdlravreteselgslkkswevllsetdala
                   L kl++++ +++++ ++s+ + +++r+ ++ l++l ++w+vll++t++++
   mKIAA0131    45 LDKLAERFTSRSGrlggSSQEQQSFRKEPTLLSPL-HCWAVLLEHTRQQS 93   

                   kshlqlsedL<-*
                   +    lse L   
   mKIAA0131    94 RESAALSEVL    103  

RhoGAP: domain 1 of 1, from 509 to 683: score 211.6, E = 6.9e-59
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      +p+P++ve+Ci+++  +Gl+ eGI+RvsG + r+ e+r+af++ged+
   mKIAA0131   509    QPVPLVVESCIRFINLNGLQHEGIFRVSGAQARISEIRDAFERGEDp 555  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                               ++ +  +d  +vAg+LKly+R+L  PL++ +++ e++ 
   mKIAA0131   556 L-----------EKGCTVHDLDSVAGVLKLYFRSLEPPLFPLDMFNELLA 594  

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                    a+l              e   er++ +  ll +LP++ + +LryL+++L
   mKIAA0131   595 SAEL--------------EVVGERVEPVSHLLFKLPRPVLVVLRYLFtFL 630  

                   nrVaehsevNkMtarNLAivFgPtLlrpp.....ltdikhqnkvvetlie
                   n++a++s++N+M++ NLA++FgPtLl  p +++++++   +n++v+tli 
   mKIAA0131   631 NHLAQYSDENMMDSYNLAVCFGPTLLPVPagqdpVALQGRVNQLVQTLIL 680  

                   nad<-*
                   ++    
   mKIAA0131   681 QPA    683  

SH3: domain 1 of 1, from 740 to 795: score 68.7, E = 7.5e-16
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                       ++vA ++y++++++EL+F++GD++++  + +++Ww+Ge+   G +G
   mKIAA0131   740    LEAVACFAYTGRTAQELTFQRGDVLRLYARASSDWWRGEHA--GVQG 784  

                   lfPsnYVeeie<-*
                   l+P+ Y++++e   
   mKIAA0131   785 LIPHKYITLCE    795  

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