hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msh/msh25292/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0129  ( 453 res)   msh25292

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SPRY     Domain in SPla and the RYanodine Receptor.      96.1    4.3e-24   1
BBOX     B-Box-type zinc finger, protein interaction     43.4    2.9e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BBOX       1/1      30    72 ..     1    51 []    43.4  2.9e-08
SPRY       1/1     330   453 .]     1   145 []    96.1  4.3e-24

Alignments of top-scoring domains:
BBOX: domain 1 of 1, from 30 to 72: score 43.4, E = 2.9e-08
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      +  ++C+eH  e+pae+fC + +g + C+ C   g H      rgH 
   mKIAA0129    30    AYGWRCPEHS-ERPAELFC-RRCGRCVCALCPVLGAH------RGHP 68   

                   vvll<-*
                   v+l    
   mKIAA0129    69 VGLA    72   

SPRY: domain 1 of 1, from 330 to 453: score 96.1, E = 4.3e-24
                   *->sGkhYfEVevdtggdkghwrvGvatksvhlypfkvrrkrkggvsllG
                       G+hY+EV+v++ g    w+vG a++s        rr+     + lG
   mKIAA0129   330    AGRHYWEVDVQEAGV--GWWVGAAYPSL-------RRRGASAAARLG 367  

                   edkgSwgyrgdggkkyhasefgeeyglpfqepgDviGcflDleaggStis
                   ++  Sw++  ++  +y+a + g +  l +  ++ ++G+flD+eag   + 
   mKIAA0129   368 CNRESWCVKRYD-LEYWAFHDGQRSRLRPRRDPHRLGVFLDYEAG--ILA 414  

                   FykNGkyLgdshilaffdvtfsgpLyPavslgstdgGgesvrlnfGp.p<
                   Fy +       ++l++f++ f +pLyPa  l+        +++ +   p 
   mKIAA0129   415 FYDVAGG---MSHLHTFHAAFQEPLYPALRLWE-------GPISIPRlP  453  

                   -*
                     
   mKIAA0129     -    -    

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