hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh25292/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0129  ( 453 res)   msh25292

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SPRY     SPRY domain                                     74.6    2.1e-18   1
zf-B_box B-box zinc finger                               45.3    1.3e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-B_box   1/1      32    72 ..     1    46 []    45.3  1.3e-09
SPRY       1/1     330   453 .]     1   154 []    74.6  2.1e-18

Alignments of top-scoring domains:
zf-B_box: domain 1 of 1, from 32 to 72: score 45.3, E = 1.3e-09
                   *->ervCpeHg.ekaslfCedDqalLCvvCdesgeHsanklargHtvvpl
                      +++CpeH + +a+lfC+ ++ + C  C   g H      rgH v + 
   mKIAA0129    32    GWRCPEHSeRPAELFCRRCGRCVCALCPVLGAH------RGHPVGLA 72   

                   <-*
                      
   mKIAA0129     -     -    

SPRY: domain 1 of 1, from 330 to 453: score 74.6, E = 2.1e-18
                   *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgger
                       G+hY+EV+v+++g    +w+vG a++s           ++r+ +  
   mKIAA0129   330    AGRHYWEVDVQEAGV---GWWVGAAYPSL----------RRRGASAA 363  

                   ..llGddegswgydgsggkkyhagesgepyglpfqe..kgdviGcflDye
                    +l+++   sw++   +   y+a++  +  ++ + +++ + + G+flDye
   mKIAA0129   364 arLGCNR-ESWCVKRYD-LEYWAFH--DGQRSRLRPrrDPHRLGVFLDYE 409  

                   agVtisFt.kNGkyLgdsEshiyaFrnvtfdkkpggpLyPavslgsadgg
                   ag  + F++++G       sh+++F+ + f     +pLyPa  l+     
   mKIAA0129   410 AG-ILAFYdVAGGM-----SHLHTFH-AAFQ----EPLYPALRLWE---- 444  

                   geairlnfgqlp<-*
                      +++ + +lp   
   mKIAA0129   445 ---GPISIPRLP    453  

//