hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj19346/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0128  ( 449 res)   mfj19346

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GTP_CDC  Cell division protein                          384.5   1.1e-111   1
MMR_HSR1 GTPase of unknown function                     -10.4       0.06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MMR_HSR1   1/1      65   209 ..     1   140 []   -10.4     0.06
GTP_CDC    1/1      61   334 ..     1   294 []   384.5 1.1e-111

Alignments of top-scoring domains:
MMR_HSR1: domain 1 of 1, from 65 to 209: score -10.4, E = 0.06
                   *->lrvaivGrPNVGKSTLiNaLtgk...kraiVsdyPGtTrdpnegrve
                      + +  vG +  GKSTL+ +L + + +  + +  +PG+ +  n++ ++
   mKIAA0128    65    FNILCVGETGLGKSTLMDTLFNTkfeGEPATHTQPGVQLQSNTYDLQ 111  

                   l..dgrqiilvDTPGiiegaskgeg.........elgertleaieeaDli
                    ++ g ++++v T+G+++   k    ++  +  ++ +e++l++  +   +
   mKIAA0128   112 EsnVGLKLTIVSTVGFGDQINKEDSykpivefidAQFEAYLQEELKIRRV 161  

                   lfV............vDase.gltedytieeDleiadllydeerernlel
                   l+  ++++ +     +  + + l+       Dl   ++l           
   mKIAA0128   162 LHSyhdsrihvclyfIAPTGhSLK-----SLDLVTMKKL----------- 195  

                   tLqelekkgkPvilvlNKiD<-*
                         k +  +i v+ K D   
   mKIAA0128   196 ----DSKVN--IIPVIAKSD    209  

GTP_CDC: domain 1 of 1, from 61 to 334: score 384.5, E = 1.1e-111
                   *->kGfdFTLMVVGeSGLGKtTlINTLFltdLidangvanDsreidgpae
                       Gf F++++VGe GLGK+Tl+ TLF+t+   +            pa 
   mKIAA0128    61    QGFCFNILCVGETGLGKSTLMDTLFNTKFEGE------------PAT 95   

                   tkikkTveIkeitkveiEEdGvkLnLTViDTPGFGDaiDNskcWepIveY
                    ++   v++  +++  + E +v L+LT++ T GFGD+i+ +++ +pIve+
   mKIAA0128    96 -HTQPGVQLQ-SNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEF 143  

                   IdeQheqYLrqEsrinRet..kivDnRVHcCLYFIsPtGhgLkpLDvefM
                   Id Q+e+YL++E +i+R   ++  D+R+H+CLYFI PtGh Lk LD+ +M
   mKIAA0128   144 IDAQFEAYLQEELKIRR-VlhSYHDSRIHVCLYFIAPTGHSLKSLDLVTM 192  

                   KkLsekVNlIPVIAKADtLTadElqefKkrIreeierqnIkIYkFPPdee
                   KkL++kVN+IPVIAK+D   + El  fK +I  e+   ++ IY+F P+++
   mKIAA0128   193 KKLDSKVNIIPVIAKSDAISKSELAKFKIKITSELVSNGVQIYQF-PTDD 241  

                   edeGDEefkeqtqqLkssiPFAIVGSneeiengdGekVRGRkYPWGvVEV
                   e+      +e +  + + +PFA+VGS+ee+ +   ++ R R+YPWG+V V
   mKIAA0128   242 ESV-----SEINGTMNAHLPFAVVGSTEEVKI-GNKMMRARQYPWGTVQV 285  

                   ENpsHCDFvkLRnlLirtHLqDLketTeeilYEnYRsekLsalglkaen<
                   EN+ HCDFvkLR++Lir +++DL e T+  +YE YR+ kL+++g k+ + 
   mKIAA0128   286 ENEAHCDFVKLREMLIRVNMEDLREQTHARHYELYRRCKLEEMGFKDTD  334  

                   -*
                     
   mKIAA0128     -    -    

//