hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mib/mib33003/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0126  ( 1030 res)   mib33003

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ubox     Modified RING finger domain                    105.8    4.9e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ubox       1/1     955  1018 ..     1    72 []   105.8  4.9e-27

Alignments of top-scoring domains:
Ubox: domain 1 of 1, from 955 to 1018: score 105.8, E = 4.9e-27
                   *->eFiCPIslevMeDPVilpsGKgqTyERraIekwlksgGrhgtcPvTg
                      eF++PI+ ++M+DPV+lps+ ++T +R++I ++l+s+   +t+P+++
   mKIAA0126   955    EFLDPIMSTLMSDPVVLPSS-RVTVDRSTIARHLLSD---QTDPFNR 997  

                   qpLpthedLiPnKtglalKslIqew<-*
                   +pL t +++ Pn    +lK++Iq w   
   mKIAA0126   998 SPL-TMDQIRPN---TELKEKIQRW    1018 

//