hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mib/mib33003/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0126  ( 1030 res)   mib33003

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
U-box    U-box domain                                   171.6    1.3e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
U-box      1/1     951  1025 ..     1    81 []   171.6  1.3e-47

Alignments of top-scoring domains:
U-box: domain 1 of 1, from 951 to 1025: score 171.6, E = 1.3e-47
                   *->DiPDEFlDPItleLMkDPVilPSGkityDRstIerHLlsEAWGvdpt
                      D++DEFlDPI+++LM DPV+lPS+++t+DRstI+rHLls     d+t
   mKIAA0126   951    DACDEFLDPIMSTLMSDPVVLPSSRVTVDRSTIARHLLS-----DQT 992  

                   DPftGRepLthdeliPNleLKekIdafleekrea<-*
                   DPf+ R+pLt+d++ PN eLKekI+++l+e++++   
   mKIAA0126   993 DPFN-RSPLTMDQIRPNTELKEKIQRWLAERKQQ    1025 

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