hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj03178/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0124  ( 737 res)   mpj03178

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   168.1    8.9e-46   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7     393   432 ..     1    46 []    47.3  2.1e-09
WD40       2/7     435   474 ..     1    46 []    10.5       11
WD40       3/7     513   556 ..     1    46 []     3.8  1.2e+02
WD40       4/7     559   597 ..     1    46 []    17.7     0.76
WD40       5/7     600   639 ..     1    46 []    22.8    0.048
WD40       6/7     643   682 ..     1    46 []    35.5    7e-06
WD40       7/7     694   737 .]     1    46 []    35.9  5.6e-06

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 393 to 432: score 47.3, E = 2.1e-09
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  +  +++gH++   V+++++sp g      ++lasgs+Dgt++lW
   mKIAA0124   393    PvCQALVYRGHSD--LVRCLSVSPGG------QWLASGSdDGTLKLW 431  

                   d<-*
                   +   
   mKIAA0124   432 E    432  

WD40: domain 2 of 7, from 435 to 474: score 10.5, E = 11
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t ++ +t +   g   V+s+a++p+      + +l+++  D  + l 
   mKIAA0124   435    TaRCMKTVH-VGG--VVRSIAWNPNP-----TICLVAAAmDDAVLLL 473  

                   d<-*
                   +   
   mKIAA0124   474 N    474  

WD40: domain 3 of 7, from 513 to 556: score 3.8, E = 1.2e+02
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgt...
                      +++    l+ +H++  pVt v+++  g      ++la+  +   +++
   mKIAA0124   513    EhQRGLRLRiCHSK--PVTQVTWHGRG------DYLAVVLsSQEhtq 551  

                   irlWd<-*
                   + l     
   mKIAA0124   552 VLLHQ    556  

WD40: domain 4 of 7, from 559 to 597: score 17.7, E = 0.76
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd
                       ++  + ++   g   V +vaf+p+        +l+++s ++ir+++
   mKIAA0124   559    RrRSQSPFRRSHG--QVQCVAFHPSR------PFLLVASQRSIRIYH 597  

                   <-*
                      
   mKIAA0124     -     -    

WD40: domain 5 of 7, from 600 to 639: score 22.8, E = 0.048
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       ++l+++l    +  +V+s+a++p g      + +++gs D+++  +
   mKIAA0124   600    RqELTKKLMPNCK--WVSSMAVHPAG------DNIICGSyDSKLVWF 638  

                   d<-*
                   d   
   mKIAA0124   639 D    639  

WD40: domain 6 of 7, from 643 to 682: score 35.5, E = 7e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k+ ++l+ H++  + ++vaf+p         l+asgs+Dg++ + 
   mKIAA0124   643    StKPYKVLRHHKK--ALRAVAFHPRY------PLFASGSdDGSVIVC 681  

                   d<-*
                   +   
   mKIAA0124   682 H    682  

WD40: domain 7 of 7, from 694 to 737: score 35.9, E = 5.6e-06
                   *->t.kllrtlkgHtge..spVtsvafspdggssdspnllasgs.Dgtir
                         ++++lkgHt +++ +V++vaf+p+        +++s++ Dgtir
   mKIAA0124   694    LlVPVKVLKGHTLTrdLGVLDVAFHPTQ------PWVFSSGaDGTIR 734  

                   lWd<-*
                   l++   
   mKIAA0124   735 LFS    737  

//