hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05536/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0122  ( 860 res)   mbg05536

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
G-patch  glycine rich nucleic binding domain             81.1    1.3e-19   1
ZnF_RBZ  Zinc finger domain                              38.8    7.2e-07   1
RRM      RNA recognition motif                           37.9    1.3e-06   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM        1/2      65   133 ..     1   121 []    14.6     0.12
ZnF_RBZ    1/1     143   168 ..     1    25 []    38.8  7.2e-07
RRM        2/2     230   310 ..     1   121 []    23.3    0.013
G-patch    1/1     786   832 ..     1    48 []    81.1  1.3e-19

Alignments of top-scoring domains:
RRM: domain 1 of 2, from 65 to 133: score 14.6, E = 0.12
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                               +++    ++r                +s     ++vr+
   mKIAA0122    65    ---------SSEEQSAEIRGQL-------------QSHGVQAREVRL 89   

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +r+k                      +G+s+GfaFVeF+  +dA +   +
   mKIAA0122    90 MRNKS---------------------SGQSRGFAFVEFSHLQDATRW--M 116  

                   ealnaskGkeledgGrptlglrVe<-*
                   ea++  +   +   G++   +      
   mKIAA0122   117 EANQ--HSLNI--LGQK---VSMH    133  

ZnF_RBZ: domain 1 of 1, from 143 to 168: score 38.8, E = 7.2e-07
                   *->gdWeCpa.CtflNfasrskCfaCgap<-*
                      +dW C+++C+++Nf++r+kCf+Cg p   
   mKIAA0122   143    EDWLCNKqCGVQNFKRREKCFKCGVP    168  

RRM: domain 2 of 2, from 230 to 310: score 23.3, E = 0.013
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvs..v
                      t++ +NL  +p  t + +  +               +++  + s++v
   mKIAA0122   230    TIILRNL--NPHSTMDSILGAL--------------APYAVLSSsnV 260  

                   rivrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAl
                   r+++dk+                     T  ++GfaF++ ++    ++ l
   mKIAA0122   261 RVIKDKQ---------------------TQLNRGFAFIQLSTIVVRAAQL 289  

                   liealna.skGkeledgGrptlglrVe<-*
                    ++ l+a +   ++  +G++   ++Ve   
   mKIAA0122   290 -LQILQAlHPPLTI--DGKT---INVE    310  

G-patch: domain 1 of 1, from 786 to 832: score 81.1, E = 1.3e-19
                   *->istsniGaklLekMGWkeGkGLGkneqGivePIeakikkkdrkGLGa
                      ++++niG ++L++MGWkeG GLG+++qGiv+PIea+ + ++++GLGa
   mKIAA0122   786    LGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTR-VRGSGLGA 831  

                   v<-*
                   +   
   mKIAA0122   832 R    832  

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