hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05536/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0122  ( 860 res)   mbg05536

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
G-patch  G-patch domain                                  81.5    1.7e-20   1
zf-RanBP Zn-finger in Ran binding protein and others     29.8    6.3e-05   1
zf-C2H2  Zinc finger, C2H2 type                          15.9       0.98   1
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or      9.4       0.02   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-RanBP   1/1     140   171 ..     1    32 []    29.8  6.3e-05
RRM_1      1/1     231   309 ..     1    74 []     9.4     0.02
zf-C2H2    1/1     689   714 ..     1    24 []    15.9     0.98
G-patch    1/1     788   832 ..     1    45 []    81.5  1.7e-20

Alignments of top-scoring domains:
zf-RanBP: domain 1 of 1, from 140 to 171: score 29.8, E = 6.3e-05
                   *->ragsdWdCissClvqNfatstkCvaCqapkps<-*
                      ++ +dW C++ C+vqNf ++ kC+ C+ pk+    
   mKIAA0122   140    KINEDWLCNKQCGVQNFKRREKCFKCGVPKSE    171  

RRM_1: domain 1 of 1, from 231 to 309: score 9.4, E = 0.02
                   *->lfVgNLppdtteedLkdlFskfGpi..esikivrDttretgrskGfa
                      +  +NL+p  t + +  + +++   ++ ++++++D  ++t  ++Gfa
   mKIAA0122   231    IILRNLNPHSTMDSILGALAPYAVLssSNVRVIKD--KQTQLNRGFA 275  

                   FVeFedeedAek....AldalnG.kelggrelrv<-*
                   F++  +    +++  + l+al+ + +++g+++ v   
   mKIAA0122   276 FIQLSTIVVRAAqllqILQALHPpLTIDGKTINV    309  

zf-C2H2: domain 1 of 1, from 689 to 714: score 15.9, E = 0.98
                   *->ykCpfdCgksFsrksnLkrHlrt...H<-*
                        C   C + F +k+ L rH++ ++ H   
   mKIAA0122   689    LACL-LCRRQFPSKEALIRHQQLsglH    714  

G-patch: domain 1 of 1, from 788 to 832: score 81.5, E = 1.7e-20
                   *->tsniGfklLqKMGWkeGqGLGkneqGikePieakikpdraGLGae<-
                      ++niG+++Lq+MGWkeG+GLG+++qGi++Piea+ + +++GLGa+  
   mKIAA0122   788    SDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGAR   832  

                   *
                    
   mKIAA0122     -   -    

//