hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mie/mie11082/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0120  ( 217 res)   mie11082

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CH       Calponin homology domain                        95.3    7.1e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CH         1/1      44   150 ..     1   100 []    95.3  7.1e-24

Alignments of top-scoring domains:
CH: domain 1 of 1, from 44 to 150: score 95.3, E = 7.1e-24
                   *->eeeallrWinsll.........kvtnfssdlkDGvvLckLlnslsPa
                       e++l  Wi  + +++ +++++ ++nf+++lkDG+vLckL+nsl+P 
   mKIAA0120    44    LEQILIQWITTQCredvgqpqpGRENFQKWLKDGTVLCKLINSLYPE 90   

                   gsvdkkk......rfkkleNinlalsfaeklgafLGvgkvvlfdpeDlve
                   g  + kk + ++ +fk++e i ++l++ae++    G+  +++f+++Dl+e
   mKIAA0120    91 GQAPVKKiqassmAFKQMEQISQFLQAAERY----GINTTDIFQTVDLWE 136  

                   gnenkklilgviwtLirl<-*
                   g    k++++v+ tL+ l   
   mKIAA0120   137 G----KNMACVQRTLMNL    150  

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