hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mie/mie11082/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0120 ( 217 res) mie11082 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CH Calponin homology (CH) domain 101.2 2e-26 1 Calponin Calponin family repeat 53.5 4.5e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CH 1/1 44 155 .. 1 121 [] 101.2 2e-26 Calponin 1/1 192 217 .] 1 26 [] 53.5 4.5e-12 Alignments of top-scoring domains: CH: domain 1 of 1, from 44 to 155: score 101.2, E = 2e-26 *->qekellrWinsvlagypgnkdtlPippvritnfftdwlkDGlaLcaL e+ l++Wi ++++++g+ p++ ++ f+ wlkDG++Lc+L mKIAA0120 44 LEQILIQWITTQCREDVGQ-------PQPGRENFQKWLKDGTVLCKL 83 lnklrPglidkkkv..pslsrfdkleNlnlaldaaekeGlgiilvlidpe +n+l+P+ ++k+ + s ++f+++e ++++l+aae++G + +++++++ mKIAA0120 84 INSLYPEGQAPVKKiqASSMAFKQMEQISQFLQAAERYGINT-TDIFQTV 132 DivegnpdPDeklvltllwqLirrfq<-* D++eg++ + +v ++l+ L + mKIAA0120 133 DLWEGKN---MACVQRTLMNLGGLAV 155 Calponin: domain 1 of 1, from 192 to 217: score 53.5, E = 4.5e-12 *->iGLqmGtnKgAsqaGmtaYGtprrli<-* iGLqmGtn+gAsqaGmt+YG+pr+++ mKIAA0120 192 IGLQMGTNRGASQAGMTGYGMPRQIL 217 //