hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB Sequence file: /cdna4/rodent/full/goal/mni/mni13228/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0118 ( 253 res) mni13228 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- small_GTP small_GTP: small GTP-binding protein domain 88.1 1.8e-22 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- small_GTP 1/1 46 207 .. 1 186 [] 88.1 1.8e-22 Alignments of top-scoring domains: small_GTP: domain 1 of 1, from 46 to 207: score 88.1, E = 1.8e-22 *->lkdikigivGdpnvGkstllnrllgnkgsitesgptdgttrdyvtes + +k++++G + vGk++l+ r+ nk ++++ + +++t + mKIAA0118 46 AYSFKVVLLGEGCVGKTSLVLRYCENK-FNDKHIT--TLQASFLTKK 89 ieedgktitgatfqWgykfnllDtpGlhrqedydalrrlyypevlsslev ++gk + + ++Dt+G qe++ al+++yy+++++++ v mKIAA0118 90 LNIGGKR---------VNLAIWDTAG---QERFHALGPIYYRDSNGAILV 127 ldlvilvldvedglekdtkeiihhadkygvpillvgnkidlkdekpgyfv +d++ +++++++ + ke+++ + ++ + +vgnkidl+ e+ mKIAA0118 128 YDVTDE-DSFQKVK-NWVKELRKMLG-NEICLCIVGNKIDLEKER----- 169 dlkphlaslfaklngephfiplsaetgkgidslfglvea<-* ++ ++a+ +a++ g +sa+ kgi++lf + + mKIAA0118 170 HVSIQEAESYAESVGAK-HYHTSAKQNKGIEELFLDLCK 207 //