hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mni/mni13228/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0118  ( 253 res)   mni13228

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ras      Ras family                                     272.5    5.3e-78   1
MMR_HSR1 GTPase of unknown function                      12.2    0.00051   1
Arf      ADP-ribosylation factor family                 -51.5    5.5e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MMR_HSR1   1/1      49   164 ..     1   140 []    12.2  0.00051
Arf        1/1      34   209 ..     1   186 []   -51.5  5.5e-05
Ras        1/1      50   211 ..     1   174 []   272.5  5.3e-78

Alignments of top-scoring domains:
MMR_HSR1: domain 1 of 1, from 49 to 164: score 12.2, E = 0.00051
                   *->lrvaivGrPNVGKSTLiNaLtgk...kraiVsdyP.GtTrdpnegrv
                      ++v++ G   VGK++L+ + +  + +++ i++ ++++ T+  n g  
   mKIAA0118    49    FKVVLLGEGCVGKTSLVLRYCENkfnDKHITTLQAsFLTKKLNIGGK 95   

                   eldgrqiilvDTPGiiegaskgegelgertleaieeaDlilfVvDasegl
                   +    ++ + DT+G  +    g +          +++  +++V D++++ 
   mKIAA0118    96 R---VNLAIWDTAGQERFHALGPI--------YYRDSNGAILVYDVTDE- 133  

                   tedytieeDleiadllydeerernleltLqelekkgkPvilvlNKiD<-*
                         +  +++ +++          + L+++ ++++ + +v NKiD   
   mKIAA0118   134 ------DSFQKVKNWV----------KELRKMLGNEICLCIVGNKID    164  

Arf: domain 1 of 1, from 34 to 209: score -51.5, E = 5.5e-05
                   *->gflkiflkllglwnKEmRILiLGLDnAGKTTILykLklge.vvttiP
                       +     +  g+   ++++++LG  + GKT ++ ++  ++ ++ +i 
   mKIAA0118    34    AAGGGAAAAAGR-AYSFKVVLLGEGCVGKTSLVLRYCENKfNDKHIT 79   

                   Ti..GFNvEtveykn..vkFtvWDvGGQeslRPlWrnYfpnTdavIfVVD
                   T++  F ++++ +++++v++ +WD  GQe+   l   Y+++ ++ I V D
   mKIAA0118    80 TLqaSFLTKKLNIGGkrVNLAIWDTAGQERFHALGPIYYRDSNGAILVYD 129  

                   SaDrdRieeak...eELhaLLneeeLadaplLilANKQDlpgAlseaEir
                   + D d ++  k+  +EL ++L+ e      l i++NK+Dl+   +e +++
   mKIAA0118   130 VTDEDSFQKVKnwvKELRKMLGNE----ICLCIVGNKIDLE---KERHVS 172  

                   eaLgLhelkgskgkVtlegdRpWeiqgcsAvkGeGLyEGldWLsnni<-*
                    +  ++    s      +g+ + +   +sA    G+ E +  L++     
   mKIAA0118   173 IQEAESYAE-S------VGAKHYH---TSAKQNKGIEELFLDLCKRM    209  

Ras: domain 1 of 1, from 50 to 211: score 272.5, E = 5.3e-78
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYipTIGvDFytktvevdgkt
                      K+Vl+G+g+VGK+sL++R+ +nkF++++i+T  + F+tk ++++gk+
   mKIAA0118    50    KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKR 96   

                   vkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSFenvkkWleei
                   v L IWDTAGQErF+al p YYR+++G++LVYD+T++dSF++vk+W++e+
   mKIAA0118    97 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKEL 146  

                   lrhadkdenvpivLVGNKcDLeddedlelekqkRqVsteeGealAkelgA
                   +++ +  + +  ++VGNK+DLe          +R Vs +e+e +A++ g 
   mKIAA0118   147 RKMLG--NEICLCIVGNKIDLEK---------ERHVSIQEAESYAESVG- 184  

                   lpFmETSAKtneNVeeaFeelareilk<-*
                   ++++ TSAK+n+++ee F++l +++++   
   mKIAA0118   185 AKHYHTSAKQNKGIEELFLDLCKRMIE    211  

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