hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpk/mpk02408/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0116  ( 286 res)   mpk02408

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
RNase_PH   3' exoribonuclease family, domain 1          155.6    8.5e-43   1
RNase_PH_C 3' exoribonuclease family, domain 2           52.6    8.9e-12   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
RNase_PH     1/1      26   161 ..     1   154 []   155.6  8.5e-43
RNase_PH_C   1/1     191   257 ..     1    84 []    52.6  8.9e-12

Alignments of top-scoring domains:
RNase_PH: domain 1 of 1, from 26 to 161: score 155.6, E = 8.5e-43
                   *->efRpieietGvlprQAAeGSalvelGddTkVlvtvtgeieppaqtda
                      ++R++e+et+v+++  ++GSa+v+lG +T  lv+v++e++ p     
   mKIAA0116    26    DYRCVEVETDVVSN--TSGSARVKLG-HTDFLVGVKAEMGTP----- 64   

                   QvllsldpplkglleveynaapfstgerkrREseGrptdrreveisrLid
                       +l+ p++g+le+ ++++  +t+e++     Gr++d+  +ei++ ++
   mKIAA0116    65 ----KLEKPNEGYLEFFVDCSANATPEFE-----GRGGDDLGTEIANTLY 105  

                   RalrpsrlidleklcI.egkpewqirvdvevlesdGstaprdaainAasl
                   R++   +++dl  lcI++++++w+++vdv+ le++G++  +da+++A+ +
   mKIAA0116   106 RIFNNKSSVDLRSLCIsPREHCWVLYVDVLLLECGGNL--FDAISIAVKA 153  

                   ALadAgiP<-*
                   AL++++iP   
   mKIAA0116   154 ALFNTRIP    161  

RNase_PH_C: domain 1 of 1, from 191 to 257: score 52.6, E = 8.9e-12
                   *->dpvaavtvGlvddqdeTeeeiilwlDptaeEdsllsdadlvVagted
                      ++++ vt ++++        +++ +D+t++E++ +s a+l V++t++
   mKIAA0116   191    NVPCIVTLCKIGC-------RHV-VDATLQEEA-CSLASLLVSVTSK 228  

                   GkskrksivalqmdalGkgnglteelleealelAkeg<-*
                   G      ++++ +  +G +++l++e ++e++e +k     
   mKIAA0116   229 G-----VVTCMRK--VG-KGSLDPESIFEMMESSKRV    257  

//