hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msj/msj01112/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0112  ( 373 res)   msj01112

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRS1     Ribosome biogenesis regulatory protein (RRS1   409.3   3.7e-119   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRS1       1/1      30   205 ..     1   198 []   409.3 3.7e-119

Alignments of top-scoring domains:
RRS1: domain 1 of 1, from 30 to 205: score 409.3, E = 3.7e-119
                   *->ksitVEkeielqfDLGNLLafDrNpldelrlsdadssrgekeeeLks
                      ++itV+ke+el fDLGNLLa+DrNp+++lr +++ +  +++   L +
   mKIAA0112    30    QRITVHKELELEFDLGNLLASDRNPPTVLRQAGPSP--EAE---LRA 71   

                   laRdNvQlLvNklwsLPterveEgiGGtGGqssvmtivqLPePTTrLPRe
                   laRdN+QlL+N+lw LPterveE++           +++LPeP TrLPRe
   mKIAA0112    72 LARDNTQLLINQLWRLPTERVEEAV-----------VARLPEPATRLPRE 110  

                   KpLPkPKPlTKWEkFArkKGIkkKKKeGKlVyDEasgeWvPkwGYkRank
                   KpLP+P+PlT+W++FAr+KGI++KKK+ +lV+DEasg+W+++wGYkRa+ 
   mKIAA0112   111 KPLPRPRPLTRWQQFARLKGIRPKKKT-NLVWDEASGQWRRRWGYKRAR- 158  

                   ddtkdWLiEvpdnaKGtddPlvDpFakridkkKerVaKNEknRlkNlkrA
                   ddtk+WLiEvp++a    dP +D+Fakr ++kKerVaKNE+nRl+Nl+rA
   mKIAA0112   159 DDTKEWLIEVPGSA----DPMEDQFAKRTQAKKERVAKNELNRLRNLARA 204  

                   e<-*
                   +   
   mKIAA0112   205 H    205  

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