hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpk/mpk01295/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0111  ( 410 res)   mpk01295

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d   205.4    5.3e-57   1
HELICc   helicase superfamily c-terminal domain         132.9    3.5e-35   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEXDc      1/1      56   253 ..     1   219 []   205.4  5.3e-57
HELICc     1/1     290   371 ..     1    86 []   132.9  3.5e-35

Alignments of top-scoring domains:
DEXDc: domain 1 of 1, from 56 to 253: score 205.4, E = 5.3e-57
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                      gf+k++++Q++ai+ +++grdvi++ + G+GKT++f  ++l++l+ +
   mKIAA0111    56    GFeKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQ 102  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                           + +++L+l+PtreLa Q+++ l +lg +++      ++++++
   mKIAA0111   103 V-------RETQALILAPTRELAVQIQKGLLALGDYMN------VQCHAC 139  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi
                   +gG++     e++rkl  g+ +++ +Tpgr++d++++++ l+ + +++++
   mKIAA0111   140 IGGtNV---GEDIRKLDYGQ-HVVAGTPGRVFDMIrRRS-LRTrAIKMLV 184  

                   lDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATpp.eienll
                   lDEa+++l++      gf++q+ ++ ++lp++ q++l SAT+p+ei +++
   mKIAA0111   185 LDEADEMLNK------GFKEQIYdVYRYLPPATQVVLISATLPhEILEMT 228  

                   klflnlpelfpnpvfisvgf...tlepieqf<-*
                    +f+       +p++i v++++ tle+i+qf   
   mKIAA0111   229 NKFMT------DPIRILVKRdelTLEGIKQF    253  

HELICc: domain 1 of 1, from 290 to 371: score 132.9, E = 3.5e-35
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                      d+l+e+++e+    ++ v ++HG+++q+eRe i+++Fr+g ++vL++
   mKIAA0111   290    DWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 332  

                   TdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   Tdv +rGlD+p+v+l+Inydlp + + yi+RiGR GR+G   
   mKIAA0111   333 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG    371  

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