hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpk/mpk01295/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0111  ( 410 res)   mpk01295

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
DEAD       DEAD/DEAH box helicase                       196.3    4.7e-55   1
Helicase_C Helicase conserved C-terminal domain         132.5    7.4e-36   1
ResIII     Type III restriction enzyme, res subunit     -27.3      0.056   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
ResIII       1/1      58   222 ..     1   244 []   -27.3    0.056
DEAD         1/1      60   227 ..     1   266 []   196.3  4.7e-55
Helicase_C   1/1     295   371 ..     1    76 []   132.5  7.4e-36

Alignments of top-scoring domains:
ResIII: domain 1 of 1, from 58 to 222: score -27.3, E = 0.056
                   *->iklRpyQeeAierllesiekgelrlatglkdkdkkkrglivmATGsG
                       k+   Q++Ai+ ++                  k + ++ ++  G+G
   mKIAA0111    58    EKPSAIQQRAIKQII------------------KGRDVIAQSQSGTG 86   

                   KTltaakiliarllkkqqklkhg.riddskvLFlVprkdLleQaleeF..
                   KT t     ++++l          r+    +L+l+p+++L+ Q ++ +  
   mKIAA0111    87 KTATFSV-SVLQCL------DIQvRET--QALILAPTRELAVQIQKGLla 127  

                   ..tkfeskkkkefknpgvdkklkvltdnqkdsalegkskkndieiiftti
                    +++ + +++++               ++++++ e+ +k +  +++++  
   mKIAA0111   128 lgDYMNVQCHAC---------------IGGTNVGEDIRKLDYGQHVVAGT 162  

                   QkLskalklgkendeeekskstesvvglrlav.esleflldefdliIiDE
                        ++ +                  +r+  ++ ++       +++ DE
   mKIAA0111   163 PGRVFDMIR------------------RRSLRtRAIK-------MLVLDE 187  

                   aHrssaktksakededatkl.e.v.yrkilekwelelnk.kyfkpafl.L
                        a++           + +++ +++i +         +y++pa++ +
   mKIAA0111   188 -----ADE-----------MlNkGfKEQIYD-------VyRYLPPATQvV 214  

                   GlTATPer<-*
                     +AT ++   
   mKIAA0111   215 LISATLPH    222  

DEAD: domain 1 of 1, from 60 to 227: score 196.3, E = 4.7e-55
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->ptpiQaeaipaileneGfalredvlssggmdrlvlqApTGSGKTlaf
                      p++iQ++ai++i+  +G   r dv+        + q++ G+GKT+ f
   mKIAA0111    60    PSAIQQRAIKQII--KG---R-DVI--------A-QSQSGTGKTATF 91   

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   llPilygqrllkgpksarggksqgggknergfkidspqalvlaPTreLae
                      +l  q l+ +  +                    +qal+laPTreLa 
   mKIAA0111    92 SVSVL--QCLDIQVRE--------------------TQALILAPTRELAV 119  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   QiyeelkkllkilalsplgvnellrrigtglrvavlslyGGsslkdqldk
                   Qi + l +l+                 ++++++ ++  +GG++++++++k
   mKIAA0111   120 QIQKGLLALGD----------------YMNVQCHAC--IGGTNVGEDIRK 151  

                RF x xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   l.rgkreskggpdIvvgTPgrLldllrngrinikievssertgklklknl
                   l++       g ++v gTPgr++d++             +r ++l+++++
   mKIAA0111   152 LdY-------GQHVVAGTPGRVFDMI-------------RR-RSLRTRAI 180  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   khlkllVlDEahrlldmghgFgedleeilrrlprneplraqllgtilHqk
                      k+lVlDEa+++l    gF+e+++++ r+lp+                
   mKIAA0111   181 ---KMLVLDEADEMLNK--GFKEQIYDVYRYLPP---AT----------- 211  

                RF xxxxxxxxxxxxxxxxxxxx   
                   pniQtllfSATlpprevedl<-*
                      Q++l SATl p e+ +    
   mKIAA0111   212 ---QVVLISATL-PHEILEM    227  

Helicase_C: domain 1 of 1, from 295 to 371: score 132.5, E = 7.4e-36
                   *->ll.epgikvarlhGglsqeeReeilekFrsgkskvLvaTdvaarGlD
                      +++e ++ v ++hG+++q+eRe i+++Frsg s+vL++Tdv arGlD
   mKIAA0111   295    KMrEANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 341  

                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   +p+v+l+Inydlp n+e yi+RiGR GR+G   
   mKIAA0111   342 VPQVSLIINYDLPNNRELYIHRIGRSGRYG    371  

//