hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp01112/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0110  ( 283 res)   mbp01112

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF1135  Protein of unknown function (DUF1135)          729.6   1.4e-215   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF1135    1/1      19   283 .]     1   267 []   729.6 1.4e-215

Alignments of top-scoring domains:
DUF1135: domain 1 of 1, from 19 to 283: score 729.6, E = 1.4e-215
                   *->LslaaapdLewyeKpEethAleveleevippaqepsnlaEpFCPrdc
                      Ls+aaap+L+wyeKpEethA+ev+le+vippaqepsn+aEpFCPrd 
   mKIAA0110    19    LSPAAAPNLDWYEKPEETHAPEVDLETVIPPAQEPSNPAEPFCPRD- 64   

                   lvPvvFPGpvsqedCCqFtceLLKhilyqRlqlpLPYeqLkHFYRKpvPq
                   lvPvvFPGpvsqedCCqFtceLLKhilyqR+qlpLPYeqLkHFYRK +Pq
   mKIAA0110    65 LVPVVFPGPVSQEDCCQFTCELLKHILYQRHQLPLPYEQLKHFYRK-APQ 113  

                   aedtakKKawlatEarnRKCqqaLAeLEsvLsHLedFFARtLvpkvLill
                   aedta+KKawlatEarnRKCqqaLAeLEsvLsHL+dFFARtLvp+vLill
   mKIAA0110   114 AEDTARKKAWLATEARNRKCQQALAELESVLSHLRDFFARTLVPQVLILL 163  

                   gGnALspKeFyELDLsrLapfgvDqgLntaaCLRRLFRAiFlADpFsELq
                   gGnALspKeFyELDLsrLapfgvDqgLntaaCLRRLFRAiFlADpFsELq
   mKIAA0110   164 GGNALSPKEFYELDLSRLAPFGVDQGLNTAACLRRLFRAIFLADPFSELQ 213  

                   tPPLmGtivmvqGHRdCGEDWFqPKLnYRvPsRGHKLtvtLsCGRPsvpa
                   tPPLmGtivmvqGHRdCGEDWFqPKLnYRvPsRGHKLtvtLsCGRPsvpa
   mKIAA0110   214 TPPLMGTIVMVQGHRDCGEDWFQPKLNYRVPSRGHKLTVTLSCGRPSVPA 263  

                   mAsEDYiWFqAPvtlKGFhE<-*
                   mAsEDYiWFqAPvtlKGFhE   
   mKIAA0110   264 MASEDYIWFQAPVTLKGFHE    283  

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