hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msj/msj02122/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0109  ( 436 res)   msj02122

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
Adap_comp_sub  Adaptor complexes medium subunit famil   446.4   2.5e-130   1
Clat_adaptor_s Clathrin adaptor complex small chain     -58.6       0.15   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Clat_adaptor_s   1/1       4   143 ..     1   164 []   -58.6     0.15
Adap_comp_sub    1/1     160   436 .]     1   325 []   446.4 2.5e-130

Alignments of top-scoring domains:
Clat_adaptor_s: domain 1 of 1, from 4 to 143: score -58.6, E = 0.15
                   *->mikaiLifnrqGkpRLaKwYDtavddpek..qKlieevyavvsaRdp
                      mi  ++i n +G ++  + Y    dd  ++  ++++    v+ aR  
   mKIAA0109     4    MIGGLFIYNHKGEVLISRVY---RDDIGRnaVDAFR--VNVIHAR-- 43   

                   KhQssFLvtPPslllflEsNfvEfrdeDlkviYKrY.AsLYFvvivdPdq
                     Q          + +  +N++  +   + v  Kr+++ L    +v+  +
   mKIAA0109    44 --Q---------QVRSPVTNIARTSF--FHV--KRSnIWL---AAVTKQN 75   

                   dnELiiLelIhrFVEsLDryFgKNVCELDLvFNFekvylilDEmvmGDGe
                    n  +  e +    +++ +yFg    E  +  NF  +y  lDE+++  G 
   mKIAA0109    76 VNAAMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDF-GY 123  

                   IlEtskkeVlkrvalldele<-*
                    + +    +   +++ +      
   mKIAA0109   124 PQNSETGALKTFITQQGIKS    143  

Adap_comp_sub: domain 1 of 1, from 160 to 436: score 446.4, E = 2.5e-130
                   *->vpwrpegikykkNEvflDViErvsvlvdkdGgllnsevqGtidckcf
                      + wr+egiky++NE+flDV+E+v++l++++G++l+++v+G++ +k++
   mKIAA0109   160    IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSY 206  

                   LsGmPeltlgLNdkllikkegsrgysia.es.ngsdGvnlskpkvngsie
                   LsGmPe+++g+Ndk++i+k+g +  +  ++s+++s             i 
   mKIAA0109   207 LSGMPECKFGMNDKIVIEKQGKGTADETsKSgKQS-------------IA 243  

                   ldDvsFHpCVrlseFeservIsFiPPDGCeFeLMrYRiiiLwrmaseena
                   +dD++FH+CVrls+F+ser IsFiPPDG eFeLMrYR+       +++  
   mKIAA0109   244 IDDCTFHQCVRLSKFDSERSISFIPPDG-EFELMRYRT-------TKD-- 283  

                   navklPfkvnpqvtenpsvgrievtvklrsdfksdkltaenVvIsiPvPk
                     + lPf+v+p v+e  +++++ev+v ++s+fk+ +l a++++++iP P 
   mKIAA0109   284 --IILPFRVIPLVRE-VGRTKLEVKVVIKSNFKP-SLLAQKIEVRIPTPL 329  

                   gWikqvsspvlevnsdGdqkakYdpeenaLvWsIkkipggkehtLsnkig
                   +    +s +++++   G  kakY+ +ena+vW+Ik+++g+ke+++s   +
   mKIAA0109   330 N----TSGVQVIC-MKG--KAKYKASENAIVWKIKRMAGMKESQIS---A 369  

                   elelsstsevpekdwlskensfpplyisveFsipgftaSGldpqVrslkv
                   e+el +t    +k+w     ++pp  is++F++p f+ SGl  +Vr+lkv
   mKIAA0109   370 EIELLPTND--KKKW-----ARPP--ISMNFEVP-FAPSGL--KVRYLKV 407  

                   sepknycsnykpyKWVRYvTksgtsyqvRi<-*
                    epk+++s++ ++KWVRY+ +sg  y+ R+   
   mKIAA0109   408 FEPKLNYSDHDVIKWVRYIGRSG-IYETRC    436  

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