hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mie/mie06028/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0107  ( 403 res)   mie06028

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PINT     motif in proteasome subunits, Int-6, Nip-1 a    97.4    1.7e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PINT       1/1     304   387 ..     1    92 []    97.4  1.7e-24

Alignments of top-scoring domains:
PINT: domain 1 of 1, from 304 to 387: score 97.4, E = 1.7e-24
                   *->qhverLqrkiretnllqlsepYPssislsdlakllglsvpeevEklv
                      +h+++++r++r +++ ql+e+Y +s++l ++a+++g+ v++ ++ ++
   mKIAA0107   304    PHYRYYVREMRIHAYSQLLESY-RSLTLGYMAEAFGVGVDF-IDQEL 348  

                   skaIrdgeisakIDqvngivefeevdpryltsnqlaqlaerlkkl<-*
                   s++I++g++++kID vn ive++++d       +++q++e++kk+   
   mKIAA0107   349 SRFIAAGRLHCKIDKVNEIVETNRPDS------KNWQYQETIKKG    387  

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