hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mni/mni09115/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0106  ( 227 res)   mni09115

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AhpC-TSA AhpC/TSA family                                230.9    1.9e-65   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AhpC-TSA   1/1      10   165 ..     1   161 []   230.9  1.9e-65

Alignments of top-scoring domains:
AhpC-TSA: domain 1 of 1, from 10 to 165: score 230.9, E = 1.9e-65
                   *->vGkkAPdFsltavvgeefkeitlkDfkGKkwvVLfFyPlDFTpVCpT
                       G++AP+F++ ++ g     i+++Df G++w +Lf++P+DFTpVC+T
   mKIAA0106    10    LGDEAPNFEANTTIGR----IRFHDFLGDSWGILFSHPRDFTPVCTT 52   

                   EliafsdlapEFkklgvedVLgvSvDspfsHkaWikdereeggl...gkl
                   El++ ++lapEF k++v+ ++++S+Ds+++H+aW kd++++ g ++++kl
   mKIAA0106    53 ELGRAAKLAPEFAKRNVK-LIALSIDSVEDHLAWSKDINAYNGEtptEKL 101  

                   nypllsDWpnreisrayGvldekeeeGialRliaRglFiIDgpdgiirys
                   ++p++ D   r +++++G+ld+ e++ + ++++aR +Fi + pd+++++s
   mKIAA0106   102 PFPIIDD-KGRDLAILLGMLDPVEKDANNMPVTARVVFIFG-PDKKLKLS 149  

                   evnndevggrnadeilr<-*
                   ++ +++++grn+deilr   
   mKIAA0106   150 IL-YPATTGRNFDEILR    165  

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