hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpk/mpk05323/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0103  ( 297 res)   mpk05323

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR_2    Tetratricopeptide repeat                        44.1      3e-09   3
TPR_1    Tetratricopeptide repeat                        23.6     0.0046   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR_1      1/2      87   120 ..     1    34 []    13.6     0.85
TPR_2      1/3      87   120 ..     1    34 []    21.9    0.015
TPR_1      2/2     155   188 ..     1    34 []     9.9      2.4
TPR_2      2/3     155   188 ..     1    34 []    24.9   0.0019
TPR_2      3/3     189   225 ..     1    34 []     3.0       97

Alignments of top-scoring domains:
TPR_1: domain 1 of 2, from 87 to 120: score 13.6, E = 0.85
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       ++    G+ ++++++yd+Ai+ y++ L+ dP+n   
   mKIAA0103    87    HRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTN    120  

TPR_2: domain 1 of 3, from 87 to 120: score 21.9, E = 0.015
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                       ++ ++ G+  +++++y++A+++y++ l+ dP+n   
   mKIAA0103    87    HRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTN    120  

TPR_1: domain 2 of 2, from 155 to 188: score 9.9, E = 2.4
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       ea+  l+ +y +  +y +A  ++e+    +P+n   
   mKIAA0103   155    QEAWHELAELYINEHDYAKAAFCLEELMMTNPHN    188  

TPR_2: domain 2 of 3, from 155 to 188: score 24.9, E = 0.0019
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                       ea++ l+++y++  dy++A+ ++e+    +P+n   
   mKIAA0103   155    QEAWHELAELYINEHDYAKAAFCLEELMMTNPHN    188  

TPR_2: domain 3 of 3, from 189 to 225: score 3.0, E = 97
                   *->aealynlGlayyklg...dyeeAleayekAleldPnn<-*
                        ++ + +++ y +g+ +++e  ++++ +Al+l+ +n   
   mKIAA0103   189    HLYCQQYAEVKYTQGgleNLELSRKYFAQALKLNNRN    225  

//