hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05872/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0099  ( 1218 res)   mbg05872

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Pumilio  Pumilio-like repeats                           292.4    3.3e-83   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Pumilio    1/8     878   913 ..     1    39 []    36.2  4.5e-06
Pumilio    2/8     914   949 ..     1    39 []    35.0    1e-05
Pumilio    3/8     950   984 ..     1    39 []    31.3  0.00013
Pumilio    4/8     988  1023 ..     1    39 []    41.9  8.4e-08
Pumilio    5/8    1024  1059 ..     1    39 []    41.0  1.6e-07
Pumilio    6/8    1060  1095 ..     1    39 []    43.6  2.6e-08
Pumilio    7/8    1096  1131 ..     1    39 []    37.7  1.6e-06
Pumilio    8/8    1139  1174 ..     1    39 []    37.2  2.1e-06

Alignments of top-scoring domains:
Pumilio: domain 1 of 8, from 878 to 913: score 36.2, E = 4.5e-06
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      ei gh+ e+s+dq+G+r+iQ  le+a+++   ++++ ++   
   mKIAA0099   878    EIAGHIMEFSQDQHGSRFIQLKLERATAA---ERQLVFN    913  

Pumilio: domain 2 of 8, from 914 to 949: score 35.0, E = 1e-05
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      ei    ++L++d +Gn+ViQk++e++s +   qk  + +   
   mKIAA0099   914    EILQAAYQLMVDVFGNYVIQKFFEFGSHE---QKLALAE    949  

Pumilio: domain 3 of 8, from 950 to 984: score 31.3, E = 0.00013
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                       i+gh+l+L+ ++yG+rViQk+le+ + s   +++ i +   
   mKIAA0099   950    RIRGHVLSLALQMYGCRVIQKALEFIP-S---DQQVINE    984  

Pumilio: domain 4 of 8, from 988 to 1023: score 41.9, E = 8.4e-08
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      e+ gh+l+ +kdq+Gn+V+Qk++e+  +     +++iid   
   mKIAA0099   988    ELDGHVLKCVKDQNGNHVVQKCIECVQPQ---SLQFIID    1023 

Pumilio: domain 5 of 8, from 1024 to 1059: score 41.0, E = 1.6e-07
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      ++kg++  Ls+++yG+rViQ++leh+ ++   q   i++   
   mKIAA0099  1024    AFKGQVFALSTHPYGCRVIQRILEHCLPD---QTLPILE    1059 

Pumilio: domain 6 of 8, from 1060 to 1095: score 43.6, E = 2.6e-08
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      e++ h ++L++dqyGn+ViQ++leh+ ++   +k +i+    
   mKIAA0099  1060    ELHQHTEQLVQDQYGNYVIQHVLEHGRPE---DKSKIVA    1095 

Pumilio: domain 7 of 8, from 1096 to 1131: score 37.7, E = 1.6e-06
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      ei+g++l Ls+++++++V++k++ has     ++  +id   
   mKIAA0099  1096    EIRGNVLVLSQHKFASNVVEKCVTHASRT---ERAVLID    1131 

Pumilio: domain 8 of 8, from 1139 to 1174: score 37.2, E = 2.1e-06
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                        +  l++++kdqy+n+V+Qk++++a +    q++  ++   
   mKIAA0099  1139    GPHSALYTMMKDQYANYVVQKMIDVAEPG---QRKIVMH    1174 

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