hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg05872/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0099 ( 1218 res) mbg05872 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PUF Pumilio-family RNA binding repeat 280.0 3.1e-80 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PUF 1/8 878 912 .. 1 35 [] 33.8 3.8e-06 PUF 2/8 914 948 .. 1 35 [] 34.4 2.6e-06 PUF 3/8 950 985 .. 1 35 [] 29.2 9.6e-05 PUF 4/8 988 1022 .. 1 35 [] 42.3 1.1e-08 PUF 5/8 1024 1058 .. 1 35 [] 39.1 9.8e-08 PUF 6/8 1060 1094 .. 1 35 [] 47.2 3.7e-10 PUF 7/8 1096 1131 .. 1 35 [] 30.1 5.2e-05 PUF 8/8 1139 1173 .. 1 35 [] 33.0 7.1e-06 Alignments of top-scoring domains: PUF: domain 1 of 8, from 878 to 912: score 33.8, E = 3.8e-06 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +i g++ + s+dq+G++++Q le+at ++ql++ mKIAA0099 878 EIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVF 912 PUF: domain 2 of 8, from 914 to 948: score 34.4, E = 2.6e-06 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +i++ +qL++d +Gnyv+Qk++e+++ eq+ + mKIAA0099 914 EILQAAYQLMVDVFGNYVIQKFFEFGSHEQKLALA 948 PUF: domain 3 of 8, from 950 to 985: score 29.2, E = 9.6e-05 *->sikgnlvqLstdqyGnyvlQkllevat.peqiqlil<-* i+g++++L+++ yG++v+Qk le+ ++ +q + + mKIAA0099 950 RIRGHVLSLALQMYGCRVIQKALEFIPsDQQVINEM 985 PUF: domain 4 of 8, from 988 to 1022: score 42.3, E = 1.1e-08 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +++g+++++++dq+Gn+v+Qk++e+ p+ +q+i+ mKIAA0099 988 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFII 1022 PUF: domain 5 of 8, from 1024 to 1058: score 39.1, E = 9.8e-08 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +kg++ Lst++yG++v+Q++le++ p q+ +il mKIAA0099 1024 AFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPIL 1058 PUF: domain 6 of 8, from 1060 to 1094: score 47.2, E = 3.7e-10 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* ++ ++ +qL++dqyGnyv+Q++le++ pe++++i+ mKIAA0099 1060 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIV 1094 PUF: domain 7 of 8, from 1096 to 1131: score 30.1, E = 5.2e-05 *->sikgnlvqLstdqyGnyvlQkllevat.peqiqlil<-* +i+gn+++Ls+++++++v++k+ ++a+++e li mKIAA0099 1096 EIRGNVLVLSQHKFASNVVEKCVTHASrTERAVLID 1131 PUF: domain 8 of 8, from 1139 to 1173: score 33.0, E = 7.1e-06 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* + l+++++dqy+nyv+Qk+++va p q++ ++ mKIAA0099 1139 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVM 1173 //