hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpk/mpk03388/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0098 ( 542 res) mpk03388 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Cpn60_TCP1 TCP-1/cpn60 chaperonin family 715.7 2.1e-211 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Cpn60_TCP1 1/1 45 539 .. 1 537 [] 715.7 2.1e-211 Alignments of top-scoring domains: Cpn60_TCP1: domain 1 of 1, from 45 to 539: score 715.7, E = 2.1e-211 *->ladivkttLGPkGrnKmlvngsyGditiTnDGaTIlkeielqhPyen +a+ ++t+LGP+G++Km+v+ ++Gd+tiTnDGaTIl+ ++++h mKIAA0098 45 VANTMRTSLGPNGLDKMMVD-KDGDVTITNDGATILSMMDVDHQ--- 87 lgAkllveaskkQddevGDGTTtvvvLAgeLLkeaekLinaGlhPtqIir Akl+ve+sk+Qdde+GDGTT vvvLAg+LL+eae+L+++G+hP+ I++ mKIAA0098 88 -IAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIAD 136 GyelAaekaleaLkklsipvetndkinkeellkvAktslnsKvisgnsia Gye+Aa++a+++L+k+s +v++++ n e l+++Akt+l+sKvi+ ++ + mKIAA0098 137 GYEQAARIAIQHLDKISDKVLVDIN-NPEPLIQTAKTTLGSKVINSCHRQ 185 dAlakvgvdavitveeekndkysfdldnievvkglGgsifdsglisGyvi +a+++v+av+tv++ ++++ +d++ i+v+ + Gg ++d++li+G+++ mKIAA0098 186 --MAEIAVNAVLTVADMERRD--VDFELIKVEGKVGGRLEDTKLIKGVIV 231 tkeerhpvelempkrlendaKIavlncpLeiLelktetkrplviiasded +k+++hp +mpk++++ aKIa+l cp+e ++k++tk +++ + s+ed mKIAA0098 232 DKDFSHP---QMPKKVVD-AKIAILTCPFE--PPKPKTK-HKLDVMSVED 274 leaLstlEenklkgkvkviavkkRvcdgpnvvitqkegidDiAlhtladt ++aL++ E++k+++++k+i+ + g+n+ i+q+ g+dD+A+h l mKIAA0098 275 YKALQKYEKEKFEEMIKQIKET-----GANLAICQW-GFDDEANHLLL-- 316 visdkagImalrrvskedlgrlakvlgakvvttligpgagsedeeeiGer +g a+r+v +++ +a+++g+++v+++++++ e++G+ mKIAA0098 317 ----QNGLPAVRWVGGPEIELIAIATGGRIVPRFSELT-----SEKLGF- 356 devleqeigestsddkvtkleerkarLsgkvatIllRGateveldElerr ++v++++ +++t+ dk+ ++e++k+ ++++tI++RG+++++++E++r+ mKIAA0098 357 AGVVQEISFGTTK-DKMLVIEKCKN---SRAVTIFIRGGNKMIIEEAKRS 402 ieDAlnavkaaiedgriVPGGGaaEielakaLdkykakslegkeqlavea ++DAl++++++i+d+r+V GGGaaEi +a+a++++ a++++ +eq+a++a mKIAA0098 403 LHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQE-ADKCPTLEQYAMRA 451 fakALeviPkiLAeNAGldgidviskLraehakGnsdlknyGydaatgki fa+ALeviP++L+eN+G+++i++++++ra+ +k+ ++ +G+d+++++ mKIAA0098 452 FADALEVIPMALSENSGMNPIQTMTEVRARQVKES--NPALGIDCLHKGS 499 vdmveaGIiDplkVkrqalklAteaAsliLtiDdiImakp<-* dm +++i+ l+ k+q ++lAt ++ +iL+iDdi + ++ mKIAA0098 500 NDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 539 //