hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpk/mpk03388/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0098  ( 542 res)   mpk03388

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
Cpn60_TCP1 TCP-1/cpn60 chaperonin family                715.7   2.1e-211   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Cpn60_TCP1   1/1      45   539 ..     1   537 []   715.7 2.1e-211

Alignments of top-scoring domains:
Cpn60_TCP1: domain 1 of 1, from 45 to 539: score 715.7, E = 2.1e-211
                   *->ladivkttLGPkGrnKmlvngsyGditiTnDGaTIlkeielqhPyen
                      +a+ ++t+LGP+G++Km+v+ ++Gd+tiTnDGaTIl+ ++++h    
   mKIAA0098    45    VANTMRTSLGPNGLDKMMVD-KDGDVTITNDGATILSMMDVDHQ--- 87   

                   lgAkllveaskkQddevGDGTTtvvvLAgeLLkeaekLinaGlhPtqIir
                     Akl+ve+sk+Qdde+GDGTT vvvLAg+LL+eae+L+++G+hP+ I++
   mKIAA0098    88 -IAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIAD 136  

                   GyelAaekaleaLkklsipvetndkinkeellkvAktslnsKvisgnsia
                   Gye+Aa++a+++L+k+s +v++++  n e l+++Akt+l+sKvi+ ++ +
   mKIAA0098   137 GYEQAARIAIQHLDKISDKVLVDIN-NPEPLIQTAKTTLGSKVINSCHRQ 185  

                   dAlakvgvdavitveeekndkysfdldnievvkglGgsifdsglisGyvi
                     +a+++v+av+tv++ ++++  +d++ i+v+ + Gg ++d++li+G+++
   mKIAA0098   186 --MAEIAVNAVLTVADMERRD--VDFELIKVEGKVGGRLEDTKLIKGVIV 231  

                   tkeerhpvelempkrlendaKIavlncpLeiLelktetkrplviiasded
                   +k+++hp   +mpk++++ aKIa+l cp+e  ++k++tk +++ + s+ed
   mKIAA0098   232 DKDFSHP---QMPKKVVD-AKIAILTCPFE--PPKPKTK-HKLDVMSVED 274  

                   leaLstlEenklkgkvkviavkkRvcdgpnvvitqkegidDiAlhtladt
                   ++aL++ E++k+++++k+i+ +     g+n+ i+q+ g+dD+A+h l   
   mKIAA0098   275 YKALQKYEKEKFEEMIKQIKET-----GANLAICQW-GFDDEANHLLL-- 316  

                   visdkagImalrrvskedlgrlakvlgakvvttligpgagsedeeeiGer
                        +g  a+r+v   +++ +a+++g+++v+++++++      e++G+ 
   mKIAA0098   317 ----QNGLPAVRWVGGPEIELIAIATGGRIVPRFSELT-----SEKLGF- 356  

                   devleqeigestsddkvtkleerkarLsgkvatIllRGateveldElerr
                   ++v++++ +++t+ dk+ ++e++k+   ++++tI++RG+++++++E++r+
   mKIAA0098   357 AGVVQEISFGTTK-DKMLVIEKCKN---SRAVTIFIRGGNKMIIEEAKRS 402  

                   ieDAlnavkaaiedgriVPGGGaaEielakaLdkykakslegkeqlavea
                   ++DAl++++++i+d+r+V GGGaaEi +a+a++++ a++++ +eq+a++a
   mKIAA0098   403 LHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQE-ADKCPTLEQYAMRA 451  

                   fakALeviPkiLAeNAGldgidviskLraehakGnsdlknyGydaatgki
                   fa+ALeviP++L+eN+G+++i++++++ra+ +k+   ++ +G+d+++++ 
   mKIAA0098   452 FADALEVIPMALSENSGMNPIQTMTEVRARQVKES--NPALGIDCLHKGS 499  

                   vdmveaGIiDplkVkrqalklAteaAsliLtiDdiImakp<-*
                    dm  +++i+ l+ k+q ++lAt ++ +iL+iDdi + ++   
   mKIAA0098   500 NDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE    539  

//