hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh04151/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0096  ( 750 res)   mbh04151

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Pkinase     Protein kinase domain                       323.5    2.4e-93   1
Pkinase_Tyr Protein tyrosine kinase                      64.9    6.5e-16   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Pkinase       1/1      18   271 ..     1   287 []   323.5  2.4e-93
Pkinase_Tyr   1/1      18   271 ..     1   272 []    64.9  6.5e-16

Alignments of top-scoring domains:
Pkinase: domain 1 of 1, from 18 to 271: score 323.5, E = 2.4e-93
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      y l ++lG+G f++V++a+h+ tg++VAvK+i+k k +     +++ 
   mKIAA0096    18    YDLDKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLATGHLFQ 64   

                   rsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrlldLfdylse
                     E++ +k ++HpNIvrl++v  + ++lyl+lE+ +gG    d fdy++ 
   mKIAA0096    65 --EVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGDGG----DMFDYIM- 107  

                   trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldengv
                    + + +l   ed akk++ Qi+ ++ Y+H+  ++HRDLKPeN+ + e+ +
   mKIAA0096   108 -KHEEGL--NEDLAKKYFAQIVHAISYCHKLHVVHRDLKPENVVFFEKQG 154  

                   vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD
                   +   +K++DFG++ k   +++ +ltt +G++ Y APE+llg++++ ++vD
   mKIAA0096   155 L---VKLTDFGFSNK--FqPGKkLTTSCGSLAYSAPEILLGDEYDAPAVD 199  

                   vWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewdsi
                   +WSlGvil+ l++G+pPF+++     ++ + + +i+ +++  +   +   
   mKIAA0096   200 IWSLGVILFMLVCGQPPFQEA-----NDSETLTMIMDCKYTVPPRVS--- 241  

                   srsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-*
                                 ++dLi+++L++DP++R + eei  HPw+   
   mKIAA0096   242 ------------AGCRDLITRMLQRDPKRRASLEEIESHPWL    271  

Pkinase_Tyr: domain 1 of 1, from 18 to 271: score 64.9, E = 6.5e-16
                   *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtL.keigasseei
                        l+k+LG+G+F +V +++       t+ kVAVK+++k  + +  + 
   mKIAA0096    18    YDLDKTLGRGHFAVVKLARHV----FTGEKVAVKVIdKT-KLDTLA- 58   

                   eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd
                       +++E++ Mk   +HpNiVrL+ v+   +      ly+++E+  gGd
   mKIAA0096    59 -TGHLFQEVRCMKLV-QHPNIVRLYEVIDT-QTK----LYLILELGDGGD 101  

                   LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV
                     d+  kh  ++ L+     ++ +Qi  + +Y +  ++vHRDL   N+  
   mKIAA0096   102 MFDYIMKH--EEGLNEDLAKKYFAQIVHAISYCHKLHVVHRDLKPENVVF 149  

                   senl.vVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygkF.t
                    e+ + VK +DFG +   ++     +++          APE l   +++ 
   mKIAA0096   150 FEKQgLVKLTDFGFSNKFQPGKKL-TTSC---GSLAYSAPEILLGDEYdA 195  

                   skSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyed.GyRLprPenC
                    + D+WS GV L+ ++  G++P +++  ++e+l ++ +d  y  p+    
   mKIAA0096   196 PAVDIWSLGVILFMLVC-GQPP-FQEANDSETLTMI-MDcKYTVPPRV-- 240  

                   PdelYdlMlqCWaedPedRPtFsel..verL<-*
                   ++   dl+++  ++dP++R + +e++++  L   
   mKIAA0096   241 SAGCRDLITRMLQRDPKRRASLEEIesHPWL    271  

//