hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00372/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0095  ( 798 res)   mpf00372

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
NIC      Nucleoporin interacting component              460.3   1.6e-134   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
NIC        1/1     246   516 ..     1   302 []   460.3 1.6e-134

Alignments of top-scoring domains:
NIC: domain 1 of 1, from 246 to 516: score 460.3, E = 1.6e-134
                   *->vlvaltkasdaktldsrkslqtrkrkdiniVeqAkkYLEqqFreymn
                      ++v lt+a+da  l+sr+s+++r+     +V qA+ YLEq++++y++
   mKIAA0095   246    TDVVLTPATDA--LKSRSSVEVRM----DFVKQALGYLEQSYKNYTL 286  

                   klvaknlqqAqlGGvPgtynlVraylnirLerqttvpglpDlesInGvPi
                   ++v++nl+qAqlGGvPgty+lVr++lni+L+  +++pgl+D+ +++G+P+
   mKIAA0095   287 VTVFGNLHQAQLGGVPGTYQLVRSFLNIKLP--APSPGLQDG-EVEGHPV 333  

                   WAliYYlLRaGdlkeAvqvlneakhqfkkfaqsFptyfqlyasskdgrLp
                   WAliYY++R+Gdl +A+qv+ +a+hq+++f+    t+fq+y++skd+rL+
   mKIAA0095   334 WALIYYCMRCGDLLAASQVVSRAQHQLGEFK----TWFQEYMNSKDRRLS 379  

                   selenkLrlEYnqriRnAleastDGDPYKrAVYkAiiGRCDvsdtslpev
                   +++enkLrl+Y++++R    ++t  DPYKrAVY+ iiGRCD++d++ +ev
   mKIAA0095   380 PATENKLRLHYRRALR----NNT--DPYKRAVYC-IIGRCDITDNQ-SEV 421  

                   adsiEDwLWlqLsliresdqesdspgErltLeelQkiiledYGesyFnks
                   ad++ED+LWl+   +  s   s++p   l   e+   +    G   F   
   mKIAA0095   422 ADKTEDYLWLKVGTV--SFGCSSPPCSTLVMHEVCVVL--RTGTVDFV-- 465  

                   PAenanqqpylYFqvLlLtGqFEaAIaFLyrfsenrvDAVHfAIaLaelg
                        n   + YFqvL+Lt+qFEaAIaFL+r++++r++AVH+A++L+el+
   mKIAA0095   466 ----SNPLYFFYFQVLFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELK 511  

                   LLrta<-*
                   LL ++   
   mKIAA0095   512 LLLKS    516  

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