hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm02131/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0094 ( 297 res) mpm02131 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Peptidase_M24 metallopeptidase family M24 331.5 9.3e-96 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Peptidase_M24 1/1 44 284 .. 1 291 [] 331.5 9.3e-96 Alignments of top-scoring domains: Peptidase_M24: domain 1 of 1, from 44 to 284: score 331.5, E = 9.3e-96 *->ekmRkAgeIadrvhravmeaikpGmteleidaeieeairkqgakvyk e+mR +++a++v++ ++ +ik G+t+ eid++ + ++ mKIAA0094 44 EGMRLVCRLAREVLDIAAGMIKAGVTTEEIDHAVHLVRTLLSY--FR 88 ekafkgyigF..ptivcsgenaavlHgikdvpndrvlkeGDivliDaGae +++y+ F+ p+++c+++n++++Hg +p++r+l+eGDiv++D++ + mKIAA0094 89 SFRLLDYLNFnfPKSCCTSVNEVICHG---IPDRRPLQEGDIVNVDITLY 135 ynGYasDitrTfpvggkvtdkqrelyeaVedaqragieavKPGvtlSLsd nGY++D+ Tf+vg v++ +r+l+++++++++++i+avKPGv++ ++ mKIAA0094 136 RNGYHGDLNETFFVGD-VDEGARKLVQTTYECLMQAIDAVKPGVRY--RE 182 ihaaihrimaeeLvklGIlkgkVqkvvenegfgiggstYQVkfvrHglGH ++++i qk+++++gf ++vr ++GH mKIAA0094 183 LGNII------------------QKHAQANGF---------SVVRSYCGH 205 glGldvHdvpkivnynprdqgkrelrtariLepGMVlTIEPgiyigkgev g+++ +H++p++++y +++ + + ++ G+V+TIEP+i++g mKIAA0094 206 GIHKLFHTAPNVPHYAKNKAVGV-------MKSGHVFTIEPMICEG---- 244 ldagersteiktladgwtvptldgkgGvRiEDdivVtedGfenLTf<-* ++ +t++dgwt++t dgk+++++E++++Vt++G+e+LT+ mKIAA0094 245 ------GWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTR 284 //