hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg10506/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0093 ( 904 res) mbg10506 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- HECTc Domain Homologous to E6-AP Carboxyl Terminus 660.2 6.4e-194 1 WW 168.1 8.5e-46 3 C2 Protein kinase C conserved region 2 (CalB) 84.9 9.5e-21 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- C2 1/1 96 198 .. 1 92 [] 84.9 9.5e-21 WW 1/3 267 299 .. 1 34 [] 59.7 3.6e-13 WW 2/3 423 455 .. 1 34 [] 57.2 2.1e-12 WW 3/3 478 510 .. 1 34 [] 63.9 2.1e-14 HECTc 1/1 567 903 .. 1 407 [] 660.2 6.4e-194 Alignments of top-scoring domains: C2: domain 1 of 1, from 96 to 198: score 84.9, E = 9.5e-21 *->tLtvkiisArnLp........DPYVkvs............kTkvvkk +++vk+i + +L +++ + +DPYV+v+ ++ ++ ++ +Tk++kk mKIAA0093 96 VVRVKVIAGIGLAkkdilgasDPYVRVTlydpmsgiltsvQTKTIKK 142 tlsgfNPvWnEesetFeFevpp..s.LeieVyDk......dfiGrvtipp +l NP+WnE ++ F v p+++++ +eV+D+++ +++df+G+v +p mKIAA0093 143 SL---NPKWNE---EILFRVLPqrHrILFEVFDEnrltrdDFLGQVDVP- 185 nnahqhsadglihlsell.ggrh.kl<-* l l++++++ + mKIAA0093 186 -------------LYPLPtENPRmER 198 WW: domain 1 of 3, from 267 to 299: score 59.7, E = 3.6e-13 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* plPpgWeer d Gr+YY+Nhe+++tqW +P + mKIAA0093 267 PLPPGWEERQDVL-GRTYYVNHESRRTQWKRPSP 299 WW: domain 2 of 3, from 423 to 455: score 57.2, E = 2.1e-12 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* +lPpgWee d Gr YY++h++k+t+W kP++ mKIAA0093 423 GLPPGWEEKQDDR-GRSYYVDHNSKTTTWSKPTM 455 WW: domain 3 of 3, from 478 to 510: score 63.9, E = 2.1e-14 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* plPpgWeer++ d Gr++++Nh+ k+tqWe+Pr+ mKIAA0093 478 PLPPGWEERTHTD-GRVFFINHNIKKTQWEDPRL 510 HECTc: domain 1 of 1, from 567 to 903: score 660.2, E = 6.4e-194 *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske + +d Lk+r L Ief +gE glD+GGv rE+ffl+ske mKIAA0093 567 VKRADLLKAR----LWIEF------DGEKGLDYGGVAREWFFLISKE 603 lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav +fnp +ygLF+ys+ dn y+L++nP +g++ne+hl+ mKIAA0093 604 MFNP-YYGLFEYSATDN-------------YTLQINPNSGLCNEDHLS-- 637 yFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDleslDP yF+fiGrv G+A+y+++llD +F rpFyK++L+k +tlhD+es+D+ mKIAA0093 638 YFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLQKL----ITLHDMESVDS 683 elyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsivles e+y+sL+w+ lend+te ld L F i++e+ mKIAA0093 684 EYYSSLRWI-------------------LENDPTE--LD--LRF-IIDEE 709 dfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAFreG +fg+ +++ELk+GGs+i VT++NkkEY++lvi++r++++++kq++AF+eG mKIAA0093 710 LFGQTHQHELKTGGSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEG 759 FseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYtensq F+e+ip++l++ +Fde+ELeLL+cGl+ ++dv+d++++T y++gY++n+q mKIAA0093 760 FFELIPQDLIK-IFDENELELLMCGLG-DVDVNDWREHTKYKNGYSMNHQ 807 tirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaLspsNGpq +i +wFW +v++++ e+r++LLqFVTG+sr+P ++GFa+L++sNGpq mKIAA0093 808 VI---HWFWKAVWMMDSEKRIRLLQFVTGTSRVP--MNGFAELYGSNGPQ 852 kFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKLLlAIneg +Ft++++g d LP+AhTCfNrL+LPpY+S + L KL++AI++ mKIAA0093 853 SFTVEQWG-----TPDKLPRAHTCFNRLDLPPYESFDELWDKLQMAIEN- 896 RiggeGFgls<-* ++GF + mKIAA0093 897 ---TQGFDGV 903 //