hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03415/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0088  ( 775 res)   mbh03415

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
Glyco_hydro_31 Glycosyl hydrolases family 31            810.7   5.5e-240   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Glyco_hydro_31   1/1     196   641 ..     1   591 []   810.7 5.5e-240

Alignments of top-scoring domains:
Glyco_hydro_31: domain 1 of 1, from 196 to 641: score 810.7, E = 5.5e-240
                   *->YffaygGptpkdvvkqYteLTGrPallpPyWalGfhqcRwgYtdkse
                      ++++  Gp++ dv++qY++LTG++a lpP+++lG+hq+Rw+Y  ++e
   mKIAA0088   196    FLML--GPSVFDVFRQYASLTGTQA-LPPLFSLGYHQSRWNY--RDE 237  

                   dedvrevvdgfreadIPlDviwlDidWhefdsfdYmdgyrdFTwdperFP
                   ++ v+ev++gf+++++P+DviwlDi        ++ dg+r+FTwdp+rFP
   mKIAA0088   238 AD-VLEVDQGFDDHNMPCDVIWLDI--------EHADGKRYFTWDPTRFP 278  

                   ddkpkemldeLhekGiklvviidPgisidkpdngeddeygvydegkekgk
                   +  p  ml+ L++k +klv+i+dP+i   k d+g    y v++e  +  +
   mKIAA0088   279 Q--PLNMLEHLASKRRKLVAIVDPHI---KVDSG----YRVHEELRN--H 317  

                   dyFvKnadGsiyiGavWPDGpsafpDFtnpfdptparkWWadeiknlyde
                   +++vK+ dGs+y+G++WP G++++pDFtnp      r+WW++++  ++++
   mKIAA0088   318 GLYVKTRDGSDYEGWCWP-GSASYPDFTNP-R---MRAWWSNMFS-FDNY 361  

                   lgsglGiDGiWiDMNEPsvwgFcGscgpntflpegaryyegFesNGqgtn
                   +gs  ++ ++W+DMNEPsv  F      n                     
   mKIAA0088   362 EGS-APNLYVWNDMNEPSV--F------N--------------------- 381  

                   aepasdsawrvegtsnstldPdptkpenlyPYaInnqgrgdlg.ekTmpt
                                                             g+e Tm +
   mKIAA0088   382 ------------------------------------------GpEVTMLK 389  

                   davHygggrktevrdhyfydggdpeevHNlYGllmakAtyealrkrsnrp
                   davHygg     + +h+        ++HN+YGl+ ++At+++l++rs ++
   mKIAA0088   390 DAVHYGG-----W-EHR--------DIHNIYGLYVHMATADGLIQRS-GG 424  

                   lKnkRpFilSRSgfaGsQRYaahWtGDNtssWehLrySipmgLsfglsGi
                      +RpF+lSR++f GsQR++a+WtGDNt++W+hL++Sipm+Ls++l G+
   mKIAA0088   425 --IERPFVLSRAFFSGSQRFGAVWTGDNTAEWDHLKISIPMCLSLALVGL 472  

                   PfvGaDiGGFfGgnkdnenfhlgpteaELcvRWmQlGAFyPffRnHssng
                   +f+GaD+GGFf  n         p++ EL+vRW+Q+GA++PffR H++++
   mKIAA0088   473 SFCGADVGGFFK-N---------PEP-ELLVRWYQMGAYQPFFRAHAHLD 511  

                   tkrvqEPWlfgeetevaeiarkalrlRYrLLPYlYtlfyeAhetGlPvmR
                   t r +EPWl ++   +++++r+al  RY+LLP++Ytlfy+Ah++G PvmR
   mKIAA0088   512 TGR-REPWLLASQ--YQDAIRDALFQRYSLLPFWYTLFYQAHKEGFPVMR 558  

                   PLflefPdDentydiddQfllGddLLVAPVleegatsrdvYLPreGvg.e
                   PL+ ++P+D+ t++i+dQf+lGd+LL+ PV + ga+ ++vYLP    g+e
   mKIAA0088   559 PLWVQYPEDMSTFSIEDQFMLGDALLIHPVSDAGAHGVQVYLP----GqE 604  

                   GgtWyDffdwtgevyeggteggggqtvtvdAPLdtiPvfvRgGsIi<-*
                   + +WyD    ++++++g      +qt+ +++ L++iPvf+RgG+I+   
   mKIAA0088   605 E-VWYDI--QSYQKHHG------PQTLYLPVTLSSIPVFQRGGTIV    641  

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