hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh32285/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0086  ( 984 res)   msh32285

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DRMBL    DNA repair metallo-beta-lactamase              160.1    3.9e-44   1
TPX2     Targeting protein for Xklp2 (TPX2)               6.1        0.9   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPX2       1/1       9    74 ..     1    60 []     6.1      0.9
DRMBL      1/1     863   961 ..     1   135 []   160.1  3.9e-44

Alignments of top-scoring domains:
TPX2: domain 1 of 1, from 9 to 74: score 6.1, E = 0.9
                   *->frsdeRAekRkEFykKleEKekakea...ekeeveakqkeeeqEeel
                       r++e + k k+   +l+E+ ++++a++++  +++  ++ ++q+ e+
   mKIAA0086     9    -RTSENPGKTKDHKVCLAETDSQISAgssQSSSCRDESQ-QSQNKET 53   

                   ...kqLR....KeLvGvfKAtPm<-*
                   +++kq+R++++K    ++K++P+   
   mKIAA0086    54 tpkKQHRtrrgKQV--TPKVRPV    74   

DRMBL: domain 1 of 1, from 863 to 961: score 160.1, E = 3.9e-44
                   *->vlTtdesesriHavpmnsleesfkiikasfnsLlelltsyekeydpv
                      ++Ttd++ s +H++pm+++         +f+ L+++l+++  +yd++
   mKIAA0086   863    LITTDMCDSLVHLLPMMQI---------NFKGLQSHLKKCGGKYDQI 900  

                   igirPTGWtkskkpkkgkdrsdqkSeissikkkvledlkaeRdvdtseav
                   +++rPTGWt+s+  +  +d ++q+                          
   mKIAA0086   901 LAFRPTGWTHSNNITSTADIIPQT-------------------------- 924  

                   KldkisiysVPYSEHSSfsELkeFvqflkPkrvIPtVn<-*
                   + ++isiy++PYSEHSS+ E+k+Fvq+lkP+++IPtVn   
   mKIAA0086   925 R-GNISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTVN    961  

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