hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/msk/msk07136/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0085  ( 263 res)   msk07136

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
mtp      mtp: Golgi 4-transmembrane spanning transpor   578.1   5.5e-170   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
mtp        1/1       8   263 .]     1   263 []   578.1 5.5e-170

Alignments of top-scoring domains:
mtp: domain 1 of 1, from 8 to 263: score 578.1, E = 5.5e-170
                   *->RsdrvrqTRCCGCfnvRvaTiaLaiyyvvvsvLlfIeltVEVahGkn
                        dr   T  CG        i  +    v+svLlfIe++VEVa+Gk+
   mKIAA0085     8    -DDRDGAT-LCGTVGCSYRKILPG--QRVMSVLLFIEHVVEVARGKV 50   

                   ScklvniqYlriadllSSefllinalvlisvSlLmgvvknREkyllpflS
                   Sc++++++Ylr+adllSS flli++l++is+SlL+gvvknREkyl+pflS
   mKIAA0085    51 SCRFFKMPYLRMADLLSS-FLLIGVLFIISISLLFGVVKNREKYLIPFLS 99   

                   lQimDyLLCLLTLLGSYiELPAYLKLARsRassskiPlmtlqLlDFvLSi
                   lQimD+LLCLLTLLGSYiELPAYLKLAR+R+++sk+PlmtlqLlDF+LSi
   mKIAA0085   100 LQIMDFLLCLLTLLGSYIELPAYLKLARPRPGPSKVPLMTLQLLDFCLSI 149  

                   LvliSSymevPTYlnfkslnhlnylPskedllhlqfiklllIvsvaFitv
                   L+l+SSymevPTYlnfks+nh+nylPs+e+++h+qfi+++lI+svaFitv
   mKIAA0085   150 LTLCSSYMEVPTYLNFKSMNHMNYLPSQEGVPHSQFINMMLIFSVAFITV 199  

                   lIfKvYlfkCVwnCYkyiknmNsPeiaekpaskmlpkvvLPsYEeAlslP
                   lI+KvY+fkCV++CYk++k+mNs  ++e+++skm++kv+LPsYEeAlslP
   mKIAA0085   200 LILKVYMFKCVYTCYKFLKHMNS--AMEDSSSKMFLKVALPSYEEALSLP 247  

                   eKtPEGdPAPPPYsev<-*
                   +KtPEGdPAPPPYsev   
   mKIAA0085   248 PKTPEGDPAPPPYSEV    263  

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